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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	912205	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	9560492	G-C	HET	INTERGENIC
SBS	Chr11	13926627	G-A	Homo	INTERGENIC
SBS	Chr11	19921311	T-C	Homo	INTERGENIC
SBS	Chr11	3053068	G-A	Homo	INTERGENIC
SBS	Chr12	10326775	C-A	HET	INTERGENIC
SBS	Chr12	24726212	G-A	HET	INTERGENIC
SBS	Chr12	7344007	T-C	HET	UTR_5_PRIME
SBS	Chr12	9640610	G-A	HET	INTERGENIC
SBS	Chr2	15103372	C-T	Homo	INTRON
SBS	Chr2	24965518	A-G	Homo	INTERGENIC
SBS	Chr3	14210824	T-A	Homo	INTERGENIC
SBS	Chr3	17404739	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	30909504	C-T	HET	INTERGENIC
SBS	Chr4	11828566	G-T	Homo	INTRON
SBS	Chr4	17676636	G-A	Homo	INTERGENIC
SBS	Chr4	5642611	T-A	HET	INTERGENIC
SBS	Chr4	6740712	C-G	Homo	INTERGENIC
SBS	Chr5	17143876	C-A	HET	INTERGENIC
SBS	Chr5	3469450	G-A	Homo	INTERGENIC
SBS	Chr6	25744566	A-G	HET	INTERGENIC
SBS	Chr6	26931469	G-C	Homo	INTERGENIC
SBS	Chr6	29223883	C-T	HET	INTERGENIC
SBS	Chr7	14192400	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	2102163	C-G	Homo	INTRON
SBS	Chr7	4986564	G-A	HET	UTR_5_PRIME
SBS	Chr8	10418243	C-T	Homo	INTERGENIC
SBS	Chr8	24052391	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g37970
SBS	Chr9	8522638	G-A	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	154850	154851	1
Deletion	Chr4	1038789	1038790	1	LOC_Os04g02710
Deletion	Chr1	1279529	1279536	7
Deletion	Chr4	2216724	2216744	20
Deletion	Chr7	4927296	4927297	1
Deletion	Chr8	5107890	5107892	2	LOC_Os08g08810
Deletion	Chr11	5399302	5399312	10
Deletion	Chr5	6026519	6026528	9
Deletion	Chr3	6749526	6749529	3
Deletion	Chr8	7384220	7384222	2
Deletion	Chr2	10444822	10444828	6	LOC_Os02g18000
Deletion	Chr1	11032744	11032745	1
Deletion	Chr9	11794984	11794988	4
Deletion	Chr12	14657836	14657840	4
Deletion	Chr10	15928220	15928221	1
Deletion	Chr7	17095062	17095074	12
Deletion	Chr7	17097001	17163000	66000	8
Deletion	Chr10	18444832	18444833	1
Deletion	Chr11	19072979	19072994	15
Deletion	Chr7	19087684	19087693	9
Deletion	Chr10	20593737	20593739	2
Deletion	Chr6	22109419	22109467	48	LOC_Os06g37400
Deletion	Chr12	22587247	22587248	1
Deletion	Chr4	25736705	25736711	6
Deletion	Chr4	25942367	25942368	1
Deletion	Chr5	26867597	26867598	1
Deletion	Chr2	27244815	27244820	5
Deletion	Chr4	28787244	28787253	9	LOC_Os04g48300
Deletion	Chr2	33674464	33674466	2
Deletion	Chr1	41342107	41342108	1

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11341825	11341867	43
Insertion	Chr1	15877751	15877751	1	LOC_Os01g28340
Insertion	Chr1	4317984	4317984	1	LOC_Os01g08670
Insertion	Chr10	5013984	5013985	2
Insertion	Chr2	31487063	31487064	2
Insertion	Chr3	477662	477662	1
Insertion	Chr3	7548789	7548830	42
Insertion	Chr4	16253951	16253956	6
Insertion	Chr5	6390419	6390419	1
Insertion	Chr6	5682267	5682269	3
Insertion	Chr8	15143567	15143568	2
Insertion	Chr9	15342636	15342636	1

No Inversion

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1208324	Chr3	10652855	2
Translocation	Chr8	1209411	Chr3	10652850	2
Translocation	Chr12	1644038	Chr6	19264972	LOC_Os06g33090
Translocation	Chr6	1948397	Chr1	28341754	2
Translocation	Chr6	1948792	Chr1	28341778	LOC_Os01g49300
Translocation	Chr12	4365544	Chr2	30232469	LOC_Os02g49470
Translocation	Chr7	5606803	Chr2	18079972
Translocation	Chr11	7272741	Chr7	17129582	LOC_Os07g29224
Translocation	Chr9	10934296	Chr5	936258

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