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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11694035	C-T	HET	UTR_5_PRIME
SBS	Chr1	21179173	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g37837
SBS	Chr10	17992861	C-T	HET	INTERGENIC
SBS	Chr10	20959440	G-C	HET	INTERGENIC
SBS	Chr10	366112	C-A	HET	INTRON
SBS	Chr10	753732	A-C	HET	INTERGENIC
SBS	Chr10	9651419	A-G	HET	INTERGENIC
SBS	Chr11	16842755	C-T	HET	INTERGENIC
SBS	Chr12	4116938	G-A	HET	INTERGENIC
SBS	Chr12	5015496	C-T	HET	INTRON
SBS	Chr2	15103372	C-T	HET	INTRON
SBS	Chr2	26779177	G-A	HET	INTERGENIC
SBS	Chr2	34745824	A-C	HET	INTERGENIC
SBS	Chr3	11048938	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g19650
SBS	Chr3	27217479	G-A	HOMO	INTERGENIC
SBS	Chr3	33349927	C-T	HOMO	UTR_3_PRIME
SBS	Chr3	9184770	A-T	HET	INTERGENIC
SBS	Chr4	16260616	T-C	HET	INTERGENIC
SBS	Chr4	17676636	G-A	HOMO	INTERGENIC
SBS	Chr4	5642611	T-A	HET	INTERGENIC
SBS	Chr4	6250132	A-G	HET	INTERGENIC
SBS	Chr5	10138787	C-G	HET	INTERGENIC
SBS	Chr7	1538238	G-A	HET	INTERGENIC
SBS	Chr8	10418243	C-T	HOMO	INTERGENIC
SBS	Chr8	25413684	C-T	HET	INTERGENIC
SBS	Chr8	5809060	G-A	HET	INTERGENIC
SBS	Chr8	5809882	T-A	HET	INTERGENIC
SBS	Chr9	8001450	A-G	HET	INTERGENIC
SBS	Chr9	8683735	G-A	HET	SYNONYMOUS_CODING

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	766283	766285	2
Deletion	Chr11	2542265	2542273	8
Deletion	Chr2	5559636	5559646	10
Deletion	Chr4	5625560	5625576	16
Deletion	Chr4	7004929	7004947	18
Deletion	Chr10	8495562	8495570	8
Deletion	Chr3	10050735	10050736	1
Deletion	Chr9	10966791	10966792	1
Deletion	Chr1	11032744	11032745	1
Deletion	Chr7	12852379	12852381	2
Deletion	Chr1	12990255	12990262	7	LOC_Os01g23080
Deletion	Chr8	17348084	17348088	4
Deletion	Chr4	18439001	18450000	11000	2
Deletion	Chr6	20262001	20542000	280000	38
Deletion	Chr6	28134766	28134778	12
Deletion	Chr3	29927917	29927925	8	LOC_Os03g52120

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	15314956	15314958	3
Insertion	Chr5	6390419	6390419	1
Insertion	Chr6	13700728	13700728	1
Insertion	Chr7	26854136	26854136	1
Insertion	Chr9	22458547	22458548	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	8667311	8838668
Inversion	Chr1	8838687	9024000	LOC_Os01g16030

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	1513280	Chr3	21846116
Translocation	Chr10	17099835	Chr7	1534481	LOC_Os07g03740
Translocation	Chr10	17099904	Chr7	1537113
Translocation	Chr9	18228509	Chr8	25413670	LOC_Os09g29950
Translocation	Chr9	18228521	Chr8	25413625	LOC_Os09g29950
Translocation	Chr11	24269459	Chr1	23524841
Translocation	Chr3	31512908	Chr1	15140079	LOC_Os03g55389

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