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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10152969	G-T	HET	INTERGENIC
SBS	Chr1	32193384	C-T	HOMO	UTR_3_PRIME
SBS	Chr1	32193387	T-G	HOMO	UTR_3_PRIME
SBS	Chr1	39364699	A-T	HOMO	INTRON
SBS	Chr10	12792472	T-A	HET	INTERGENIC
SBS	Chr11	16952648	A-G	HOMO	INTRON
SBS	Chr11	19962487	C-A	HOMO	INTRON
SBS	Chr11	19962488	C-A	HOMO	INTRON
SBS	Chr11	19962489	G-A	HOMO	INTRON
SBS	Chr11	24237317	T-A	HOMO	INTERGENIC
SBS	Chr12	4988507	C-A	HET	INTERGENIC
SBS	Chr12	5509932	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g10410
SBS	Chr2	11637147	G-C	HET	INTERGENIC
SBS	Chr2	34544961	G-T	HOMO	INTERGENIC
SBS	Chr3	23382138	C-G	HET	INTRON
SBS	Chr3	24294946	G-A	HET	INTERGENIC
SBS	Chr3	30073578	T-A	HOMO	INTERGENIC
SBS	Chr3	34606114	A-G	HET	INTERGENIC
SBS	Chr3	35989710	G-A	HET	INTRON
SBS	Chr3	5622149	T-C	HOMO	INTERGENIC
SBS	Chr4	30936768	G-A	HET	INTERGENIC
SBS	Chr5	12307001	G-A	HET	INTERGENIC
SBS	Chr5	24448941	C-A	HOMO	INTERGENIC
SBS	Chr5	5379369	C-T	HOMO	INTERGENIC
SBS	Chr6	14432195	C-A	HET	INTERGENIC
SBS	Chr6	4650024	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g09250
SBS	Chr6	7779092	A-G	HOMO	INTRON
SBS	Chr7	11897950	G-A	HET	INTERGENIC
SBS	Chr7	21249479	C-T	HET	INTERGENIC
SBS	Chr7	3228386	A-T	HET	INTRON
SBS	Chr7	3228387	A-T	HET	INTRON
SBS	Chr7	3760530	A-G	HET	INTRON
SBS	Chr7	9342439	C-T	HOMO	INTERGENIC
SBS	Chr8	2543933	G-C	HET	INTERGENIC
SBS	Chr9	6918464	G-A	HET	INTRON
SBS	Chr9	6918465	C-T	HET	INTRON

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	3848246	3848267	21	LOC_Os07g07680
Deletion	Chr5	6575683	6575710	27
Deletion	Chr5	9671957	9671978	21	LOC_Os05g16960
Deletion	Chr4	9787001	9834000	47000	5
Deletion	Chr9	10109988	10109989	1
Deletion	Chr2	13886478	13886480	2
Deletion	Chr5	15777107	15777115	8	LOC_Os05g27110
Deletion	Chr8	17670407	17670409	2
Deletion	Chr3	18649412	18649420	8
Deletion	Chr8	19252134	19252135	1
Deletion	Chr11	19539897	19539911	14
Deletion	Chr1	21069376	21069385	9	LOC_Os01g37670
Deletion	Chr3	21153666	21153669	3
Deletion	Chr10	21963548	21963549	1
Deletion	Chr4	22923089	22923091	2
Deletion	Chr3	23856232	23856248	16
Deletion	Chr6	24903382	24903384	2
Deletion	Chr12	25613043	25613046	3
Deletion	Chr2	26443854	26443856	2	LOC_Os02g43810
Deletion	Chr6	29031991	29036152	4161	LOC_Os06g48020

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	41199743	41199750	8
Insertion	Chr1	42774203	42774204	2
Insertion	Chr1	42965165	42965166	2
Insertion	Chr11	10895601	10895601	1
Insertion	Chr2	25736643	25736644	2	LOC_Os02g42810
Insertion	Chr2	35230719	35230719	1	LOC_Os02g57500
Insertion	Chr3	11743516	11743516	1
Insertion	Chr3	32604039	32604039	1
Insertion	Chr4	13151204	13151205	2
Insertion	Chr8	16438848	16438855	8
Insertion	Chr8	20289288	20289290	3

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	10141728	10651858	2
Inversion	Chr11	10583544	10651859	LOC_Os11g18770
Inversion	Chr4	11577813	11585183
Inversion	Chr4	11577919	11585204

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	7647591	Chr3	26072296	LOC_Os03g46100
Translocation	Chr8	7649095	Chr3	26072281	LOC_Os03g46100

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