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| Mutant Information |
|---|
| Mutant Name | FN1150-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1150-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10926661 | C-T | HOMO | INTRON | |
| SBS | Chr1 | 22213372 | C-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g39420 |
| SBS | Chr1 | 25727478 | G-C | HET | INTRON | |
| SBS | Chr1 | 34587224 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 7770655 | A-G | HET | INTERGENIC | |
| SBS | Chr10 | 19989350 | A-T | HET | INTERGENIC | |
| SBS | Chr11 | 10286058 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 26730092 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g43034 |
| SBS | Chr12 | 4826397 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 808718 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 12532735 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g21110 |
| SBS | Chr2 | 30080099 | G-A | HOMO | STOP_GAINED | LOC_Os02g49200 |
| SBS | Chr2 | 6718073 | C-T | HOMO | INTRON | |
| SBS | Chr2 | 8640769 | C-A | HET | INTRON | |
| SBS | Chr2 | 9940352 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 29380812 | C-G | HET | INTERGENIC | |
| SBS | Chr4 | 13553365 | C-A | HET | STOP_GAINED | LOC_Os04g23700 |
| SBS | Chr4 | 17206586 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 23751896 | T-G | HET | INTRON | |
| SBS | Chr4 | 24184866 | T-A | HET | START_GAINED | LOC_Os04g40740 |
| SBS | Chr4 | 330625 | C-A | HET | INTERGENIC | |
| SBS | Chr5 | 5207077 | A-T | HET | INTRON | |
| SBS | Chr6 | 12614874 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 28458571 | A-C | HET | INTRON | |
| SBS | Chr6 | 29505563 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr6 | 30369432 | G-T | HET | INTRON | |
| SBS | Chr7 | 17884056 | T-A | HOMO | UTR_5_PRIME | |
| SBS | Chr7 | 25851212 | C-A | HOMO | INTRON | |
| SBS | Chr7 | 7690239 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g13400 |
| SBS | Chr8 | 12594498 | G-C | HET | INTERGENIC | |
| SBS | Chr8 | 19363254 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 28048088 | G-C | HET | INTRON |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 803521 | 803524 | 3 | |
| Deletion | Chr11 | 3275966 | 3275970 | 4 | |
| Deletion | Chr1 | 4377930 | 4377931 | 1 | |
| Deletion | Chr1 | 6269448 | 6269453 | 5 | |
| Deletion | Chr6 | 11077719 | 11077727 | 8 | |
| Deletion | Chr12 | 11412085 | 11412086 | 1 | LOC_Os12g19580 |
| Deletion | Chr3 | 15815333 | 15815334 | 1 | |
| Deletion | Chr6 | 23949497 | 23949502 | 5 | |
| Deletion | Chr2 | 27950160 | 27950161 | 1 | |
| Deletion | Chr2 | 27963510 | 27963519 | 9 | LOC_Os02g45870 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 20340810 | 20340810 | 1 | |
| Insertion | Chr8 | 18204296 | 18204304 | 9 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 27194122 | 27705124 | LOC_Os01g48339 |
No Translocation