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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9187031	T-C	HET	INTERGENIC
SBS	Chr1	36906753	G-A	HET	INTRON
SBS	Chr1	39732483	G-A	HOMO	INTRON
SBS	Chr1	40702245	G-T	HET	INTERGENIC
SBS	Chr3	19507020	A-G	HET	INTRON
SBS	Chr4	2635693	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05290
SBS	Chr4	7788405	G-A	HET	INTERGENIC
SBS	Chr5	1375773	G-A	HOMO	INTERGENIC
SBS	Chr5	16743031	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g28600
SBS	Chr6	9396251	T-C	HOMO	UTR_5_PRIME
SBS	Chr6	24606904	T-A	HOMO	INTERGENIC
SBS	Chr6	25085612	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g41830
SBS	Chr7	13325155	A-T	HET	SYNONYMOUS_CODING
SBS	Chr7	15556323	A-G	HET	INTERGENIC
SBS	Chr8	341237	G-C	HET	INTERGENIC
SBS	Chr8	18848891	C-T	HET	INTERGENIC
SBS	Chr9	11602064	C-G	HET	INTERGENIC
SBS	Chr9	12058241	C-T	HET	INTRON
SBS	Chr9	12383773	G-A	HET	INTRON
SBS	Chr9	14837699	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g24850
SBS	Chr9	20023284	A-G	HOMO	UTR_3_PRIME
SBS	Chr11	774360	G-A	HET	INTERGENIC
SBS	Chr11	2499535	G-A	HET	INTERGENIC
SBS	Chr12	2619517	A-G	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	881482	881490	8
Deletion	Chr2	4111639	4111642	3
Deletion	Chr6	7027342	7027351	9
Deletion	Chr2	7241262	7241268	6
Deletion	Chr11	7756540	7756541	1
Deletion	Chr2	9089652	9089692	40	LOC_Os02g16010
Deletion	Chr11	9098249	9098252	3
Deletion	Chr1	10830553	10830557	4	LOC_Os01g19170
Deletion	Chr9	12369697	12369698	1	LOC_Os09g20520
Deletion	Chr8	17214224	17214225	1	LOC_Os08g28214
Deletion	Chr5	19399922	19399924	2
Deletion	Chr5	19636286	19743894	107608	19
Deletion	Chr10	20743125	20743134	9
Deletion	Chr10	21347869	21347876	7	LOC_Os10g39900
Deletion	Chr2	22206195	22206218	23
Deletion	Chr2	22484924	22486064	1140
Deletion	Chr2	23171241	23171248	7
Deletion	Chr6	27625723	27625731	8	LOC_Os06g45630
Deletion	Chr3	27837457	27837469	12
Deletion	Chr4	29383786	29383787	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	18371588	18371589	2
Insertion	Chr7	4124573	4124574	2
Insertion	Chr1	23496141	23496142	2
Insertion	Chr5	4925158	4925158	1
Insertion	Chr9	6713580	6713581	2
Insertion	Chr11	6203339	6203342	4
Insertion	Chr11	20608210	20608215	6

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	14512794	14627537
Inversion	Chr10	14515779	14627541	LOC_Os10g28009
Inversion	Chr2	22484939	25090295
Inversion	Chr2	22486059	25090288
Inversion	Chr1	41051503	41068250	LOC_Os01g70950

No Translocation

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