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Mutant Information

Mutant Name	FN1152-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1152-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30432103	G-A	HET	INTERGENIC
SBS	Chr1	4251016	T-C	HET	INTERGENIC
SBS	Chr10	15398012	C-T	HOMO	INTERGENIC
SBS	Chr10	16473599	G-A	HET	INTERGENIC
SBS	Chr10	17013900	G-T	HET	INTERGENIC
SBS	Chr10	17156320	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g32760
SBS	Chr10	5868586	C-A	HOMO	INTERGENIC
SBS	Chr11	19089793	A-G	HOMO	INTERGENIC
SBS	Chr11	26772812	T-C	HOMO	INTERGENIC
SBS	Chr12	1320233	C-T	HET	INTERGENIC
SBS	Chr12	15042153	G-A	HET	INTERGENIC
SBS	Chr12	966551	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g02730
SBS	Chr2	28335366	G-T	HET	UTR_3_PRIME
SBS	Chr2	71868	C-A	HET	INTERGENIC
SBS	Chr3	1238785	A-G	HET	INTRON
SBS	Chr3	16991917	G-A	HET	INTERGENIC
SBS	Chr3	27706070	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g48600
SBS	Chr3	33601997	T-A	HET	INTERGENIC
SBS	Chr4	13564858	G-A	HOMO	INTERGENIC
SBS	Chr4	16641320	A-T	HET	INTRON
SBS	Chr4	19920199	C-T	HET	INTERGENIC
SBS	Chr4	33414195	G-A	HET	INTERGENIC
SBS	Chr4	6711213	C-G	HET	INTRON
SBS	Chr5	17001875	G-A	HET	INTERGENIC
SBS	Chr5	29569703	A-G	HET	INTERGENIC
SBS	Chr5	5015179	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g09040
SBS	Chr5	818597	A-T	HOMO	INTERGENIC
SBS	Chr6	12485697	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g21640
SBS	Chr6	12524160	A-T	HOMO	INTERGENIC
SBS	Chr6	25334967	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g42200
SBS	Chr6	29215261	G-A	HOMO	UTR_3_PRIME
SBS	Chr7	11423760	G-A	HET	INTERGENIC
SBS	Chr7	15896501	C-T	HET	INTERGENIC
SBS	Chr7	21313646	G-A	HOMO	INTERGENIC
SBS	Chr7	27218674	T-C	HOMO	INTRON
SBS	Chr7	27218822	A-G	HOMO	INTRON
SBS	Chr7	27218830	C-T	HOMO	INTRON
SBS	Chr7	8299166	C-T	HOMO	INTERGENIC
SBS	Chr8	7956133	A-G	HOMO	INTERGENIC
SBS	Chr9	15838597	A-G	HOMO	INTERGENIC
SBS	Chr9	16716744	T-C	HOMO	INTERGENIC
SBS	Chr9	19635679	C-T	HET	INTERGENIC
SBS	Chr9	21740290	C-T	HET	UTR_3_PRIME

Deletions: 43

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	779806	779827	21
Deletion	Chr12	907811	907820	9	2
Deletion	Chr2	1592974	1592985	11
Deletion	Chr4	1947445	1947514	69
Deletion	Chr3	3746816	3746817	1
Deletion	Chr5	5611208	5611293	85
Deletion	Chr6	5628303	5628304	1
Deletion	Chr6	5694437	5694442	5	LOC_Os06g10900
Deletion	Chr2	6345965	6345967	2
Deletion	Chr6	6355224	6355261	37	LOC_Os06g11930
Deletion	Chr3	8137690	8137692	2
Deletion	Chr4	8561822	8561823	1
Deletion	Chr2	8736186	8736979	793	LOC_Os02g15560
Deletion	Chr1	10399560	10399573	13
Deletion	Chr11	11091478	11091479	1
Deletion	Chr12	11381903	11381905	2
Deletion	Chr4	12175449	12175450	1
Deletion	Chr4	13696821	13696827	6
Deletion	Chr8	15990383	15990384	1	LOC_Os08g26230
Deletion	Chr12	18414001	18578000	164000	23
Deletion	Chr1	18784727	18784732	5
Deletion	Chr1	18818261	18818263	2
Deletion	Chr9	18945608	18945625	17
Deletion	Chr6	20132515	20132517	2
Deletion	Chr8	20358944	20358952	8
Deletion	Chr4	20699030	20699031	1	LOC_Os04g34150
Deletion	Chr6	21362414	21362454	40
Deletion	Chr7	21601344	21601347	3
Deletion	Chr10	21687050	21687051	1
Deletion	Chr2	21962558	21962570	12
Deletion	Chr6	22262829	22262830	1
Deletion	Chr9	22367001	22459000	92000	15
Deletion	Chr3	22806429	22806435	6
Deletion	Chr3	23011041	23011065	24
Deletion	Chr1	25499222	25499224	2	LOC_Os01g44950
Deletion	Chr7	26268409	26272792	4383	2
Deletion	Chr7	26272777	26272792	15	LOC_Os07g43960
Deletion	Chr8	27918774	27918775	1
Deletion	Chr6	29450250	29450252	2
Deletion	Chr3	31060376	31060393	17
Deletion	Chr1	31294920	31294930	10
Deletion	Chr4	31821329	31821366	37
Deletion	Chr2	32476832	32476833	1

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	20171236	20171236	1
Insertion	Chr11	19039861	19039862	2
Insertion	Chr11	25763332	25763335	4
Insertion	Chr11	27475952	27475960	9
Insertion	Chr11	4829111	4829112	2
Insertion	Chr2	19293462	19293463	2
Insertion	Chr2	25831403	25831414	12	LOC_Os02g42940
Insertion	Chr2	8721374	8721374	1
Insertion	Chr4	31443242	31443256	15	LOC_Os04g52810
Insertion	Chr4	347730	347733	4
Insertion	Chr6	22079691	22079692	2
Insertion	Chr6	23543748	23543750	3
Insertion	Chr7	24851127	24851130	4
Insertion	Chr7	4714237	4714260	24

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	28178464	28243713	LOC_Os03g49600
Inversion	Chr3	28178477	28246678

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	30728337	Chr2	8737016	LOC_Os02g15560
Translocation	Chr4	30728363	Chr2	8736193	LOC_Os02g15560

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