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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19106605	G-A	HET	INTERGENIC
SBS	Chr1	21442377	G-A	HET	INTERGENIC
SBS	Chr1	25785624	C-A	HET	INTERGENIC
SBS	Chr1	25863770	A-C	HET	UTR_5_PRIME
SBS	Chr1	25863771	T-C	HET	UTR_5_PRIME
SBS	Chr1	7316544	A-T	HET	INTERGENIC
SBS	Chr10	22178987	T-A	HOMO	INTERGENIC
SBS	Chr10	22178997	C-T	HOMO	INTERGENIC
SBS	Chr11	27283394	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g45090
SBS	Chr12	7828593	A-G	HOMO	INTERGENIC
SBS	Chr2	10790964	G-C	HOMO	INTERGENIC
SBS	Chr2	12560708	T-A	HOMO	INTERGENIC
SBS	Chr3	18992859	T-G	HET	INTERGENIC
SBS	Chr3	19128206	A-C	HET	INTERGENIC
SBS	Chr4	10253124	T-C	HET	INTRON
SBS	Chr4	15869819	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	16532147	A-G	HET	INTERGENIC
SBS	Chr4	33720518	A-G	HOMO	INTRON
SBS	Chr4	5503851	T-G	HET	INTERGENIC
SBS	Chr5	14969182	C-A	HET	INTERGENIC
SBS	Chr5	18680480	A-T	HOMO	INTERGENIC
SBS	Chr5	24324693	C-A	HET	UTR_3_PRIME
SBS	Chr6	23884393	C-T	HOMO	INTERGENIC
SBS	Chr7	10613538	G-C	HET	INTERGENIC
SBS	Chr7	19152813	A-C	HET	INTERGENIC
SBS	Chr7	2091783	A-G	HET	INTERGENIC
SBS	Chr7	7081866	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g12410
SBS	Chr7	7725685	T-C	HET	INTERGENIC
SBS	Chr8	11754153	A-T	HOMO	INTERGENIC
SBS	Chr8	19486616	C-G	HET	INTERGENIC
SBS	Chr8	3325867	T-A	HET	INTERGENIC
SBS	Chr8	3434105	A-T	HET	INTRON
SBS	Chr9	3637961	G-A	HET	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1740593	1740619	26
Deletion	Chr9	3236794	3236795	1	LOC_Os09g06770
Deletion	Chr1	3977924	3977930	6
Deletion	Chr8	4449797	4449812	15
Deletion	Chr1	5195982	5195984	2
Deletion	Chr1	5197788	5197792	4
Deletion	Chr2	8399805	8399816	11
Deletion	Chr5	8933206	8933207	1
Deletion	Chr1	9600627	9600628	1
Deletion	Chr1	9604197	9604211	14
Deletion	Chr8	10544709	10544737	28	LOC_Os08g17210
Deletion	Chr4	11587851	11587855	4
Deletion	Chr2	13529483	13529491	8
Deletion	Chr2	14790985	14790995	10
Deletion	Chr10	14976740	14976753	13
Deletion	Chr4	16330094	16330097	3	LOC_Os04g27620
Deletion	Chr7	17437965	17437966	1
Deletion	Chr8	17641176	17641190	14
Deletion	Chr10	18018772	18018775	3	LOC_Os10g33920
Deletion	Chr4	19365597	19365614	17
Deletion	Chr10	20182673	20182677	4
Deletion	Chr11	21037827	21037831	4
Deletion	Chr1	21757572	21757575	3	LOC_Os01g38760
Deletion	Chr10	22313141	22313185	44
Deletion	Chr4	22586919	22586926	7	LOC_Os04g37960
Deletion	Chr1	25276561	25276566	5
Deletion	Chr6	26994464	26994474	10
Deletion	Chr4	27018809	27018817	8
Deletion	Chr11	27214969	27214973	4
Deletion	Chr7	27677911	27677924	13	LOC_Os07g46380
Deletion	Chr2	30273338	30273340	2
Deletion	Chr3	36158302	36158303	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	4266037	4266038	2
Insertion	Chr5	16413409	16413410	2
Insertion	Chr7	12858616	12858643	28

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	2898033	3237692	LOC_Os09g06190
Inversion	Chr1	24844811	25701424	2
Inversion	Chr1	24844823	25701437	2

No Translocation

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