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| Mutant Information |
|---|
| Mutant Name | FN1156-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1156-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31391863 | G-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr1 | 31391864 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g54570 |
| SBS | Chr1 | 7863095 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g14050 |
| SBS | Chr11 | 15189566 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g26500 |
| SBS | Chr11 | 2583464 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 2583465 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 20798378 | A-T | HOMO | STOP_GAINED | LOC_Os12g34310 |
| SBS | Chr12 | 25918156 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 32843776 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 8946458 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 8946459 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 10796898 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 8781973 | T-A | HET | INTRON | |
| SBS | Chr4 | 12833312 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 1960300 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 10047415 | T-C | HET | INTRON | |
| SBS | Chr7 | 11571327 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 19830577 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g33200 |
| SBS | Chr7 | 21921221 | T-C | HET | INTERGENIC | |
| SBS | Chr9 | 12525868 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 16644784 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g27390 |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 3130741 | 3130760 | 19 | LOC_Os08g05830 |
| Deletion | Chr3 | 5195710 | 5195722 | 12 | |
| Deletion | Chr11 | 11738103 | 11738121 | 18 | |
| Deletion | Chr12 | 12684724 | 12684725 | 1 | |
| Deletion | Chr8 | 13489002 | 13489004 | 2 | LOC_Os08g22370 |
| Deletion | Chr2 | 13844570 | 13844576 | 6 | |
| Deletion | Chr7 | 15252190 | 15252194 | 4 | |
| Deletion | Chr6 | 15586191 | 15586238 | 47 | |
| Deletion | Chr10 | 16144465 | 16144482 | 17 | |
| Deletion | Chr12 | 20798393 | 20798398 | 5 | LOC_Os12g34310 |
| Deletion | Chr8 | 25936111 | 25936129 | 18 | LOC_Os08g41000 |
| Deletion | Chr6 | 26149356 | 26149365 | 9 | |
| Deletion | Chr7 | 27485915 | 27485919 | 4 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 21737790 | 21737791 | 2 | |
| Insertion | Chr3 | 29240431 | 29240432 | 2 | |
| Insertion | Chr5 | 2949653 | 2949653 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 11270848 | 11279847 | LOC_Os10g21910 |
| Inversion | Chr7 | 12440018 | 14489239 | LOC_Os07g22220 |
| Inversion | Chr7 | 13338895 | 14489240 | |
| Inversion | Chr1 | 33586560 | 39114697 | LOC_Os01g67364 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 7105093 | Chr1 | 2804258 | 2 |
| Translocation | Chr12 | 7331321 | Chr2 | 28789389 | LOC_Os02g47160 |
| Translocation | Chr12 | 7333561 | Chr2 | 28789348 | 2 |
| Translocation | Chr3 | 35579705 | Chr1 | 23075268 | LOC_Os01g40820 |