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Mutant Information

Mutant Name	FN1156-XA21 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1156-XA21 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 49

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14455487	A-G	HET	INTERGENIC
SBS	Chr1	15665347	A-T	HET	INTERGENIC
SBS	Chr1	18210458	T-C	HET	INTERGENIC
SBS	Chr1	18210460	G-A	HET	INTERGENIC
SBS	Chr1	23268010	G-A	HET	INTERGENIC
SBS	Chr1	35319726	T-C	Homo	INTERGENIC
SBS	Chr1	40431153	C-T	Homo	INTERGENIC
SBS	Chr10	1201175	C-T	Homo	INTERGENIC
SBS	Chr10	3443342	G-A	HET	INTERGENIC
SBS	Chr10	7819217	G-A	HET	INTERGENIC
SBS	Chr10	7819219	G-A	HET	INTERGENIC
SBS	Chr10	8053698	A-G	HET	INTRON
SBS	Chr11	15066705	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	19873061	A-G	HET	INTERGENIC
SBS	Chr11	24932309	T-G	Homo	INTERGENIC
SBS	Chr12	10086983	G-A	HET	INTERGENIC
SBS	Chr12	13542204	G-C	HET	INTERGENIC
SBS	Chr12	7648535	A-G	HET	INTERGENIC
SBS	Chr2	15887979	T-A	HET	INTERGENIC
SBS	Chr2	20406918	A-G	HET	INTERGENIC
SBS	Chr2	4390881	A-T	Homo	INTRON
SBS	Chr3	16446584	C-T	Homo	INTERGENIC
SBS	Chr3	2174826	C-A	Homo	INTERGENIC
SBS	Chr3	23666559	G-A	Homo	INTRON
SBS	Chr3	27822326	T-C	Homo	INTRON
SBS	Chr3	28044625	C-G	HET	SYNONYMOUS_CODING
SBS	Chr3	28441415	T-C	Homo	INTERGENIC
SBS	Chr3	28976998	C-T	Homo	INTERGENIC
SBS	Chr3	30336354	C-T	Homo	INTRON
SBS	Chr4	12897839	C-T	Homo	INTERGENIC
SBS	Chr4	17482551	A-G	Homo	INTERGENIC
SBS	Chr4	28314016	T-C	HET	INTERGENIC
SBS	Chr4	3063018	A-T	HET	INTERGENIC
SBS	Chr4	3490289	G-A	HET	INTERGENIC
SBS	Chr5	16281175	A-C	HET	INTERGENIC
SBS	Chr5	2803488	C-A	Homo	INTERGENIC
SBS	Chr5	2803489	T-G	Homo	INTERGENIC
SBS	Chr5	28991326	G-A	HET	UTR_5_PRIME
SBS	Chr6	16077139	T-A	HET	STOP_GAINED	LOC_Os06g28310
SBS	Chr6	24162688	A-T	HET	INTERGENIC
SBS	Chr6	25741927	T-C	HET	UTR_3_PRIME
SBS	Chr6	28976397	A-G	Homo	INTERGENIC
SBS	Chr6	8631280	G-A	Homo	INTERGENIC
SBS	Chr6	8631282	G-A	Homo	INTERGENIC
SBS	Chr7	26954216	C-T	Homo	INTRON
SBS	Chr8	16263448	T-C	HET	INTERGENIC
SBS	Chr8	16263449	G-A	HET	INTERGENIC
SBS	Chr8	8401764	C-T	HET	INTERGENIC
SBS	Chr9	12525868	G-A	Homo	INTERGENIC

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	753905	753907	2
Deletion	Chr4	1003859	1003864	5
Deletion	Chr12	1045457	1045890	433
Deletion	Chr12	1348590	1348592	2
Deletion	Chr11	1406722	1406724	2	LOC_Os11g03620
Deletion	Chr9	1606428	1606429	1
Deletion	Chr11	2233527	2233533	6	LOC_Os11g05090
Deletion	Chr2	2504618	2504620	2
Deletion	Chr4	3060103	3060104	1
Deletion	Chr7	6414000	6419000	5001
Deletion	Chr7	6552000	6554000	2001
Deletion	Chr7	7585187	7585227	40
Deletion	Chr9	9137628	9137644	16
Deletion	Chr10	9785936	9785941	5
Deletion	Chr10	10473000	10473001	1
Deletion	Chr11	11766187	11766189	2
Deletion	Chr11	12785992	12785993	1
Deletion	Chr7	12855000	12870000	15001	2
Deletion	Chr2	14795000	14815000	20001	4
Deletion	Chr2	18080254	18080255	1
Deletion	Chr2	20406942	20406943	1
Deletion	Chr9	20764446	20764447	1	LOC_Os09g36060
Deletion	Chr7	21153679	21153685	6
Deletion	Chr5	21764624	21771115	6491
Deletion	Chr11	23379666	23379667	1
Deletion	Chr12	23570559	23570560	1
Deletion	Chr5	24777315	24777318	3
Deletion	Chr7	24784962	24784978	16
Deletion	Chr4	27943809	27943810	1
Deletion	Chr2	30004278	30004751	473
Deletion	Chr3	36060762	36060771	9	LOC_Os03g63830

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2580941	2580944	4
Insertion	Chr10	13628949	13628950	2
Insertion	Chr11	28757355	28757358	4
Insertion	Chr12	13355254	13355254	1
Insertion	Chr12	21737790	21737791	2
Insertion	Chr12	7130107	7130119	13
Insertion	Chr12	8539285	8539285	1
Insertion	Chr12	8539457	8539458	2
Insertion	Chr2	4541184	4541185	2
Insertion	Chr3	14195189	14195192	4
Insertion	Chr3	29240431	29240432	2
Insertion	Chr6	14168614	14168615	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	83591	542302	LOC_Os04g01860

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	24576050	Chr7	6416891	LOC_Os05g41960
Translocation	Chr7	26640278	Chr3	21501094	2

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