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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22966002	G-A	HET	INTERGENIC
SBS	Chr1	25534455	G-A	HOMO	INTERGENIC
SBS	Chr1	28855081	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g50220
SBS	Chr1	41173373	G-C	HOMO	INTERGENIC
SBS	Chr10	17868090	C-G	HET	SPLICE_SITE_REGION
SBS	Chr11	16254741	T-C	HOMO	INTRON
SBS	Chr11	778173	C-T	HET	INTERGENIC
SBS	Chr12	10910550	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr2	27296795	C-G	HET	INTERGENIC
SBS	Chr2	30635764	T-C	HOMO	INTERGENIC
SBS	Chr2	3998001	C-T	HOMO	INTRON
SBS	Chr3	22196267	C-A	HET	INTERGENIC
SBS	Chr4	10227603	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18500
SBS	Chr4	7214724	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g13080
SBS	Chr4	902975	A-T	HET	INTERGENIC
SBS	Chr5	11434443	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19620
SBS	Chr5	11715263	C-T	HET	INTERGENIC
SBS	Chr5	12122345	C-T	HET	INTERGENIC
SBS	Chr5	20577511	G-T	HET	INTERGENIC
SBS	Chr5	7611148	G-A	HET	INTERGENIC
SBS	Chr5	7629709	C-T	HET	INTERGENIC
SBS	Chr6	20251235	G-A	HET	INTERGENIC
SBS	Chr6	514819	C-T	HOMO	INTERGENIC
SBS	Chr7	11598160	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g19570
SBS	Chr7	15864705	G-A	HET	INTERGENIC
SBS	Chr7	161006	A-T	HET	INTRON
SBS	Chr8	14574924	T-A	HET	INTERGENIC
SBS	Chr8	2642328	T-G	HOMO	INTERGENIC
SBS	Chr9	4076991	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	5709653	G-C	HET	INTERGENIC
SBS	Chr9	9914107	G-A	HET	INTRON

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2647858	2647859	1	LOC_Os12g05740
Deletion	Chr4	6229608	6229609	1
Deletion	Chr7	6490020	6490021	1
Deletion	Chr4	6619016	6619020	4
Deletion	Chr7	8388856	8388858	2
Deletion	Chr4	9872204	9872206	2
Deletion	Chr12	11321044	11321061	17	LOC_Os12g19470
Deletion	Chr6	13355997	13356017	20
Deletion	Chr11	14208264	14208265	1
Deletion	Chr3	14506974	14506975	1
Deletion	Chr8	15513385	15513386	1
Deletion	Chr7	15611388	15611390	2	LOC_Os07g26950
Deletion	Chr4	16869480	16869492	12	LOC_Os04g28480
Deletion	Chr6	16876149	16876159	10
Deletion	Chr10	18070036	18070037	1
Deletion	Chr2	19060162	19060171	9
Deletion	Chr8	19231246	19231247	1
Deletion	Chr4	19785111	19787195	2084
Deletion	Chr4	20507885	20507886	1
Deletion	Chr3	20834848	20834852	4
Deletion	Chr1	22456557	22456563	6
Deletion	Chr3	23075213	23075229	16
Deletion	Chr2	24244397	24249487	5090
Deletion	Chr5	24430252	24430253	1
Deletion	Chr11	24450373	24450379	6
Deletion	Chr2	25943001	26150000	207000	26
Deletion	Chr3	32348219	32348225	6	LOC_Os03g56781
Deletion	Chr4	34642142	34642158	16

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	17872494	17872494	1
Insertion	Chr11	27585620	27585621	2
Insertion	Chr12	12473264	12473264	1
Insertion	Chr2	10811003	10811003	1
Insertion	Chr3	10774946	10774946	1
Insertion	Chr6	12368271	12368272	2
Insertion	Chr6	6645585	6645586	2
Insertion	Chr8	10343719	10343720	2
Insertion	Chr8	3347906	3347907	2
Insertion	Chr9	18683538	18683538	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	25189673	27007488	LOC_Os01g47256
Inversion	Chr1	25534418	27007488	LOC_Os01g47256
Inversion	Chr6	25722165	25726874	LOC_Os06g42790
Inversion	Chr6	25722181	25734754	LOC_Os06g42790

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	9584239	Chr2	24248787
Translocation	Chr3	9584243	Chr2	24244545
Translocation	Chr5	11445668	Chr2	26026995
Translocation	Chr5	11445695	Chr2	26004102
Translocation	Chr9	14290346	Chr4	2584783	2
Translocation	Chr3	15322616	Chr1	39128731	LOC_Os03g26860
Translocation	Chr11	21327652	Chr3	25354092

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