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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10542248	T-A	HET	INTRON
SBS	Chr1	32016671	A-G	HET	UTR_3_PRIME
SBS	Chr1	3905569	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr10	10153228	G-A	HET	INTERGENIC
SBS	Chr10	21816941	G-A	HET	INTERGENIC
SBS	Chr12	12324134	G-A	HET	INTRON
SBS	Chr12	16331703	G-C	HET	SYNONYMOUS_CODING
SBS	Chr2	14133869	G-C	HET	INTERGENIC
SBS	Chr2	18854604	T-C	HET	INTERGENIC
SBS	Chr2	23559472	T-C	HET	INTERGENIC
SBS	Chr2	27636160	C-T	HET	INTERGENIC
SBS	Chr3	18823336	G-T	HET	STOP_GAINED	LOC_Os03g32910
SBS	Chr3	22891069	C-T	HOMO	INTERGENIC
SBS	Chr3	25799988	T-C	HOMO	INTERGENIC
SBS	Chr3	27715398	C-T	HOMO	INTERGENIC
SBS	Chr3	28021808	G-A	HOMO	INTERGENIC
SBS	Chr4	10044660	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g18170
SBS	Chr5	17534235	G-A	HET	UTR_3_PRIME
SBS	Chr5	2524597	G-A	HET	INTRON
SBS	Chr5	9847410	C-T	HOMO	INTERGENIC
SBS	Chr6	23784885	T-A	HOMO	INTERGENIC
SBS	Chr6	4322810	G-T	HET	STOP_GAINED	LOC_Os06g08670
SBS	Chr6	8671427	T-C	HET	INTERGENIC
SBS	Chr6	9623076	C-A	HET	INTERGENIC
SBS	Chr7	13475354	G-A	HOMO	INTERGENIC
SBS	Chr7	18011209	G-T	HET	INTERGENIC
SBS	Chr8	21189081	G-A	HET	INTERGENIC
SBS	Chr9	10190082	T-G	HET	INTRON

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	639616	639620	4	LOC_Os02g02140
Deletion	Chr7	1197617	1197620	3
Deletion	Chr5	1520225	1520258	33	LOC_Os05g03574
Deletion	Chr6	3668685	3668688	3
Deletion	Chr9	4654639	4654647	8
Deletion	Chr3	4696295	4696300	5
Deletion	Chr1	5312086	5312087	1
Deletion	Chr10	7279482	7279491	9	LOC_Os10g13470
Deletion	Chr8	7817053	7817056	3
Deletion	Chr8	8130054	8130056	2
Deletion	Chr7	11059838	11059851	13
Deletion	Chr3	13042930	13042931	1	LOC_Os03g22620
Deletion	Chr7	14001638	14001639	1
Deletion	Chr12	15081945	15081956	11	LOC_Os12g25980
Deletion	Chr3	19734425	19734429	4
Deletion	Chr8	20581614	20581623	9
Deletion	Chr12	23332626	23332631	5
Deletion	Chr5	26240924	26240925	1
Deletion	Chr8	26459777	26459789	12	LOC_Os08g41900
Deletion	Chr3	28104012	28104022	10
Deletion	Chr1	32600939	32600941	2
Deletion	Chr1	37369732	37369736	4
Deletion	Chr1	37880956	37880966	10

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	5150421	5150422	2	LOC_Os01g09900
Insertion	Chr2	21458409	21458412	4
Insertion	Chr2	21840397	21840397	1
Insertion	Chr2	2937606	2937606	1
Insertion	Chr4	20742660	20742660	1	LOC_Os04g34250
Insertion	Chr5	20921055	20921056	2

No Inversion

No Translocation

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