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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11382148	G-C	HET	INTERGENIC
SBS	Chr1	11383075	A-G	HET	INTERGENIC
SBS	Chr1	13963039	G-A	HET	INTERGENIC
SBS	Chr1	17287349	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g31590
SBS	Chr1	22146594	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39350
SBS	Chr1	37777331	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	8590527	G-A	HET	INTERGENIC
SBS	Chr10	4682438	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g08620
SBS	Chr10	6612669	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g11920
SBS	Chr10	7899905	C-T	HET	INTERGENIC
SBS	Chr10	8605251	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	1290111	A-G	HOMO	INTRON
SBS	Chr11	13048151	A-C	HET	INTERGENIC
SBS	Chr11	13063440	A-G	HET	INTRON
SBS	Chr11	1884499	T-A	HET	INTRON
SBS	Chr11	5627050	A-T	HOMO	INTERGENIC
SBS	Chr12	2703069	A-T	HET	INTERGENIC
SBS	Chr12	3334968	C-T	HET	INTERGENIC
SBS	Chr3	21535594	C-A	HET	INTERGENIC
SBS	Chr3	26508699	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	4927387	G-A	HOMO	INTERGENIC
SBS	Chr4	22202826	A-T	HOMO	INTERGENIC
SBS	Chr4	22965235	G-A	HET	INTERGENIC
SBS	Chr5	16287305	G-A	HET	INTERGENIC
SBS	Chr5	16287306	C-A	HET	INTERGENIC
SBS	Chr5	26625222	C-T	HET	INTERGENIC
SBS	Chr5	6750096	G-A	HOMO	INTERGENIC
SBS	Chr6	25255345	G-T	HOMO	INTERGENIC
SBS	Chr6	25255346	G-T	HOMO	INTERGENIC
SBS	Chr6	25369197	C-T	HOMO	INTERGENIC
SBS	Chr7	21183487	G-A	HET	INTERGENIC
SBS	Chr7	9820269	T-G	HET	INTERGENIC
SBS	Chr8	1985743	C-T	HET	INTERGENIC
SBS	Chr9	9999473	T-A	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	157655	157657	2
Deletion	Chr6	2589901	2589916	15
Deletion	Chr12	8031220	8031221	1
Deletion	Chr11	9182451	9182593	142
Deletion	Chr3	10696173	10696179	6
Deletion	Chr4	11263090	11263095	5
Deletion	Chr3	12481296	12481314	18	LOC_Os03g21840
Deletion	Chr3	12668222	12668223	1
Deletion	Chr6	12682270	12682278	8
Deletion	Chr11	13048928	13048935	7
Deletion	Chr3	14286162	14286170	8
Deletion	Chr12	14409784	14409814	30
Deletion	Chr8	15480722	15481179	457
Deletion	Chr3	16183849	16183860	11	LOC_Os03g28140
Deletion	Chr9	19588444	19588452	8
Deletion	Chr8	21608314	21608317	3	LOC_Os08g34420
Deletion	Chr5	23048533	23048541	8
Deletion	Chr7	28042275	28042282	7
Deletion	Chr3	29827001	29871000	44000	8
Deletion	Chr2	32381670	32381679	9
Deletion	Chr3	33088886	33088911	25
Deletion	Chr4	34210967	34210972	5	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11844135	11844135	1
Insertion	Chr10	19688232	19688233	2
Insertion	Chr10	19839968	19839968	1
Insertion	Chr2	7943038	7943038	1
Insertion	Chr3	32775225	32775227	3
Insertion	Chr7	1186731	1186740	10

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	39671054	41249183	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	17109750	Chr5	22936964
Translocation	Chr6	17110836	Chr5	22936964
Translocation	Chr3	29758273	Chr1	41249178	LOC_Os01g71280

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