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Mutant Information

Mutant Name	FN1176-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1176-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23146821	G-T	HOMO	INTRON
SBS	Chr1	23147470	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g40920
SBS	Chr1	41049576	C-T	HET	INTERGENIC
SBS	Chr1	42121589	C-T	HET	INTERGENIC
SBS	Chr10	10500755	C-A	HOMO	INTERGENIC
SBS	Chr10	19896232	A-C	HET	INTRON
SBS	Chr10	5855404	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g10600
SBS	Chr10	6154369	A-T	HET	INTRON
SBS	Chr11	14058115	C-G	HET	INTERGENIC
SBS	Chr11	19496203	G-A	HET	INTERGENIC
SBS	Chr11	4809713	G-A	HET	INTERGENIC
SBS	Chr11	9079983	G-A	HET	INTRON
SBS	Chr12	14287423	A-T	HET	INTERGENIC
SBS	Chr2	27045527	T-C	HOMO	INTRON
SBS	Chr2	29628631	G-A	HOMO	INTERGENIC
SBS	Chr2	7025298	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g13180
SBS	Chr3	2331778	A-T	HET	INTERGENIC
SBS	Chr3	32106991	T-C	HOMO	INTERGENIC
SBS	Chr3	4532601	T-A	HOMO	INTERGENIC
SBS	Chr3	8165591	G-A	HET	INTERGENIC
SBS	Chr3	9710727	A-G	HET	INTERGENIC
SBS	Chr4	22646284	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g38042
SBS	Chr4	5581812	G-A	HET	INTERGENIC
SBS	Chr5	1762529	T-A	HET	UTR_3_PRIME
SBS	Chr5	18795668	C-T	HET	INTERGENIC
SBS	Chr5	23839510	C-A	HET	UTR_3_PRIME
SBS	Chr5	23839511	G-T	HET	UTR_3_PRIME
SBS	Chr5	8969944	C-A	HET	INTRON
SBS	Chr6	11078223	C-T	HET	INTERGENIC
SBS	Chr6	17139571	G-A	HET	INTERGENIC
SBS	Chr6	26725481	T-A	HET	INTERGENIC
SBS	Chr6	28359723	C-A	HET	INTERGENIC
SBS	Chr6	8349902	T-A	HET	INTERGENIC
SBS	Chr6	8349904	G-A	HET	INTERGENIC
SBS	Chr6	8819379	C-T	HET	INTERGENIC
SBS	Chr6	9106689	T-A	HET	INTERGENIC
SBS	Chr7	10161588	A-T	HOMO	INTERGENIC
SBS	Chr7	10831413	C-A	HET	INTERGENIC
SBS	Chr7	28357690	G-A	HOMO	INTERGENIC
SBS	Chr7	416011	C-T	HOMO	INTERGENIC
SBS	Chr7	6932418	G-A	HET	INTERGENIC
SBS	Chr8	4272857	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g07610
SBS	Chr9	22155438	G-T	HET	SYNONYMOUS_CODING

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	845209	845222	13
Deletion	Chr5	3101363	3101369	6
Deletion	Chr12	4873389	4873390	1	LOC_Os12g09290
Deletion	Chr7	8010563	8010564	1
Deletion	Chr3	8169877	8169883	6	LOC_Os03g14980
Deletion	Chr6	8333875	8333877	2
Deletion	Chr3	9709637	9709638	1	LOC_Os03g17460
Deletion	Chr2	11230912	11230913	1
Deletion	Chr12	14900576	14900581	5
Deletion	Chr3	17193124	17193128	4
Deletion	Chr11	19974931	19974934	3
Deletion	Chr6	23192795	23192798	3
Deletion	Chr7	23368907	23368928	21
Deletion	Chr12	27423215	27423216	1	LOC_Os12g44210
Deletion	Chr3	27673255	27673257	2
Deletion	Chr3	29809630	29809636	6
Deletion	Chr2	35319850	35319863	13
Deletion	Chr2	35353967	35353969	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	12205865	12205879	15
Insertion	Chr12	20711488	20711489	2
Insertion	Chr3	18166971	18166971	1	LOC_Os03g31760
Insertion	Chr8	22800889	22800889	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	5984370	6318326
Inversion	Chr4	6295351	6733059	LOC_Os04g11510

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2717457	Chr7	24948308	LOC_Os07g41610
Translocation	Chr7	6663217	Chr4	24775039
Translocation	Chr11	22938433	Chr6	1671735

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