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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4501178	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g08970
SBS	Chr1	7883468	T-C	HET	INTERGENIC
SBS	Chr1	14067499	T-A	HOMO	INTERGENIC
SBS	Chr1	14067500	G-T	HOMO	INTERGENIC
SBS	Chr1	31771745	G-T	HET	INTERGENIC
SBS	Chr2	8758003	C-A	HOMO	INTERGENIC
SBS	Chr2	22627144	A-G	HET	UTR_3_PRIME
SBS	Chr2	24064181	G-T	HET	INTRON
SBS	Chr3	4642220	C-T	HOMO	INTERGENIC
SBS	Chr3	12171817	G-T	HET	INTERGENIC
SBS	Chr3	19390804	A-T	HET	INTRON
SBS	Chr3	36204771	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g64070
SBS	Chr5	124212	C-T	HOMO	INTERGENIC
SBS	Chr5	11454773	G-T	HOMO	INTERGENIC
SBS	Chr6	1293402	A-G	HET	INTERGENIC
SBS	Chr6	29605416	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g48900
SBS	Chr7	23995247	C-G	HET	INTERGENIC
SBS	Chr8	18534959	C-A	HOMO	INTERGENIC
SBS	Chr8	20465571	T-C	HOMO	INTERGENIC
SBS	Chr9	3643453	A-G	HET	INTERGENIC
SBS	Chr9	14633705	C-T	HET	INTERGENIC
SBS	Chr10	607856	A-G	HET	INTRON
SBS	Chr10	4420206	G-T	HET	INTERGENIC
SBS	Chr10	14142662	G-A	HET	INTERGENIC
SBS	Chr10	14721465	C-T	HET	INTERGENIC
SBS	Chr10	14721468	A-T	HET	INTERGENIC
SBS	Chr10	14721469	G-T	HET	INTERGENIC
SBS	Chr10	18257987	G-T	HET	INTERGENIC
SBS	Chr11	24265271	A-T	HET	INTERGENIC
SBS	Chr11	28410559	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g47240
SBS	Chr12	11337847	C-T	HET	INTERGENIC
SBS	Chr12	17470454	T-C	HET	INTRON
SBS	Chr12	22740839	C-T	HOMO	INTERGENIC
SBS	Chr12	22740840	A-T	HOMO	INTERGENIC
SBS	Chr12	27462709	G-T	HOMO	SYNONYMOUS_CODING

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	318229	318242	13
Deletion	Chr7	517779	517803	24	LOC_Os07g01860
Deletion	Chr3	1688880	1688883	3
Deletion	Chr9	2680558	2680559	1
Deletion	Chr12	3046827	3046833	6	LOC_Os12g06350
Deletion	Chr12	3732594	3732596	2
Deletion	Chr7	4353636	4353659	23	LOC_Os07g08450
Deletion	Chr4	4553001	4765000	212000	29
Deletion	Chr2	7267610	7267614	4
Deletion	Chr4	7934058	7934074	16
Deletion	Chr12	8959330	8959697	367
Deletion	Chr4	10597102	10597117	15	LOC_Os04g19090
Deletion	Chr10	11715561	11715562	1
Deletion	Chr12	12887319	12887337	18	LOC_Os12g22830
Deletion	Chr10	12895971	12895979	8
Deletion	Chr12	14073700	14073707	7
Deletion	Chr11	15059509	15059522	13
Deletion	Chr7	15297024	15297027	3
Deletion	Chr7	15766509	15766535	26
Deletion	Chr11	16715984	16715985	1
Deletion	Chr12	16869013	16869023	10	LOC_Os12g28540
Deletion	Chr10	17846975	17847058	83
Deletion	Chr12	18063065	18063069	4
Deletion	Chr4	20775209	20775210	1
Deletion	Chr3	21884408	21884941	533	LOC_Os03g39380
Deletion	Chr12	21893907	21893913	6
Deletion	Chr1	22438351	22438369	18	LOC_Os01g39780
Deletion	Chr4	23495939	23495947	8
Deletion	Chr5	24552067	24552070	3
Deletion	Chr11	25048840	25048852	12
Deletion	Chr4	27020967	27020971	4
Deletion	Chr1	29443764	29443765	1
Deletion	Chr1	31967686	31967687	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	22672325	22672327	3
Insertion	Chr11	7829346	7829347	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2546228	3227659	LOC_Os03g05260
Inversion	Chr4	7086952	7779855	LOC_Os04g12830
Inversion	Chr10	7376853	7404646
Inversion	Chr10	12232295	12250137	LOC_Os10g23880

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	60358	Chr7	19204207
Translocation	Chr9	7322267	Chr4	7090501	LOC_Os09g12750
Translocation	Chr9	7322285	Chr4	7086978	2
Translocation	Chr6	19887580	Chr4	8795475	2

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