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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16265525	G-A	HET	INTRON
SBS	Chr1	22798621	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	26407381	C-A	HET	INTERGENIC
SBS	Chr1	9713005	A-G	HET	INTERGENIC
SBS	Chr10	9701916	C-T	HET	INTRON
SBS	Chr11	14164428	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g24840
SBS	Chr11	14851168	T-A	HET	INTERGENIC
SBS	Chr12	11022263	C-T	HET	INTERGENIC
SBS	Chr12	26325271	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g42340
SBS	Chr12	26806715	A-G	HET	START_GAINED	LOC_Os12g43165
SBS	Chr12	4630026	T-C	HOMO	INTERGENIC
SBS	Chr12	9298985	G-A	HET	INTRON
SBS	Chr2	14737621	A-T	HET	INTERGENIC
SBS	Chr2	14743144	T-A	HET	INTERGENIC
SBS	Chr2	14743146	T-C	HET	INTERGENIC
SBS	Chr3	14593751	C-T	HOMO	INTERGENIC
SBS	Chr3	19924289	C-T	HOMO	INTERGENIC
SBS	Chr3	21563873	G-T	HOMO	INTERGENIC
SBS	Chr3	31495606	A-G	HOMO	INTERGENIC
SBS	Chr3	34355514	G-A	HOMO	INTERGENIC
SBS	Chr3	34479253	T-A	HET	INTERGENIC
SBS	Chr3	7332449	A-G	HET	INTRON
SBS	Chr4	14223349	T-A	HET	INTERGENIC
SBS	Chr4	293100	C-T	HET	INTERGENIC
SBS	Chr4	33511067	G-A	HOMO	INTERGENIC
SBS	Chr5	22997167	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	3637393	T-C	HET	INTERGENIC
SBS	Chr6	3292372	G-A	HOMO	INTERGENIC
SBS	Chr8	14057839	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g23290
SBS	Chr8	17331515	C-G	HET	INTERGENIC
SBS	Chr8	27374355	T-A	HET	INTERGENIC
SBS	Chr8	28083442	T-G	HET	UTR_3_PRIME
SBS	Chr8	4704050	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g08220
SBS	Chr8	4704051	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g08220
SBS	Chr8	801625	G-T	HET	INTERGENIC

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	912337	912352	15
Deletion	Chr6	1453901	1453907	6
Deletion	Chr3	2792144	2792151	7
Deletion	Chr5	4294256	4294257	1
Deletion	Chr11	6004952	6004961	9
Deletion	Chr3	6186854	6187044	190
Deletion	Chr4	6534202	6534205	3
Deletion	Chr9	6555189	6555194	5
Deletion	Chr3	7851413	7851425	12
Deletion	Chr11	8334248	8334279	31	LOC_Os11g14810
Deletion	Chr9	9164291	9164294	3
Deletion	Chr5	9210066	9210076	10
Deletion	Chr5	9911791	9911792	1	LOC_Os05g17300
Deletion	Chr1	10327296	10327300	4
Deletion	Chr9	11067871	11067879	8
Deletion	Chr10	11209388	11209389	1
Deletion	Chr1	12120046	12120055	9
Deletion	Chr10	13150079	13151894	1815	LOC_Os10g25430
Deletion	Chr11	15283788	15283809	21	LOC_Os11g26680
Deletion	Chr11	15321034	15321050	16
Deletion	Chr10	15530878	15530879	1
Deletion	Chr10	17329253	17329255	2
Deletion	Chr3	17489188	17489190	2
Deletion	Chr11	18182890	18182905	15
Deletion	Chr4	18294655	18294661	6	LOC_Os04g30630
Deletion	Chr5	21247874	21247882	8
Deletion	Chr5	21504463	21504468	5
Deletion	Chr3	21518639	21518641	2
Deletion	Chr2	22134810	22134811	1
Deletion	Chr3	23209191	23209192	1
Deletion	Chr5	23673720	23673722	2	LOC_Os05g40290
Deletion	Chr1	25511755	25511760	5
Deletion	Chr2	31053226	31053242	16
Deletion	Chr4	34606894	34606908	14

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12883923	12883924	2
Insertion	Chr1	2329880	2329881	2
Insertion	Chr1	39916646	39916649	4
Insertion	Chr5	1837947	1837948	2
Insertion	Chr6	3255931	3255932	2
Insertion	Chr8	20282596	20282597	2
Insertion	Chr8	20382113	20382120	8
Insertion	Chr8	6003459	6003460	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7973626	8087350	LOC_Os01g14220
Inversion	Chr1	7973638	7976641	LOC_Os01g14220
Inversion	Chr1	12221176	12304548	2
Inversion	Chr1	12221187	12304551	2
Inversion	Chr3	13458080	13459178	LOC_Os03g23250

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	3234375	Chr1	23346976
Translocation	Chr5	6994875	Chr3	6186858
Translocation	Chr12	9390181	Chr10	13150088
Translocation	Chr12	9390182	Chr10	13151935	LOC_Os10g25430

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