Search Results
| Mutant Information |
|---|
| Mutant Name | FN1184-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1184-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 40
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 3759885 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 15942628 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 17740902 | A-G | HET | INTERGENIC | |
| SBS | Chr1 | 19671802 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 20052078 | T-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 27524365 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 29313911 | T-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 29313912 | T-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 2759122 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 17525466 | A-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 25979849 | G-A | HOMO | INTRON | |
| SBS | Chr3 | 26134180 | T-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 26484048 | T-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 26843974 | G-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 26843975 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 23590517 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 33293653 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 8788238 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 11872751 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 14050171 | A-G | HET | INTERGENIC | |
| SBS | Chr5 | 17934442 | A-G | HET | INTERGENIC | |
| SBS | Chr5 | 18467409 | C-G | HET | INTRON | |
| SBS | Chr5 | 19107112 | T-G | HET | INTERGENIC | |
| SBS | Chr5 | 19938243 | C-G | HET | UTR_5_PRIME | |
| SBS | Chr6 | 20189927 | G-C | HET | INTERGENIC | |
| SBS | Chr6 | 20408606 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 9345401 | A-G | HET | INTRON | |
| SBS | Chr7 | 11306933 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 11778558 | A-G | HET | INTERGENIC | |
| SBS | Chr7 | 16008329 | T-G | HET | INTERGENIC | |
| SBS | Chr8 | 12678922 | T-C | HET | INTERGENIC | |
| SBS | Chr8 | 18149510 | T-C | HOMO | INTERGENIC | |
| SBS | Chr9 | 380418 | T-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr9 | 21398825 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 22462682 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 4572445 | G-C | HET | INTERGENIC | |
| SBS | Chr11 | 8085180 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr11 | 8085181 | T-C | HET | UTR_3_PRIME | |
| SBS | Chr11 | 13897786 | T-C | HET | INTRON | |
| SBS | Chr12 | 14494881 | C-T | HOMO | INTERGENIC |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 3805693 | 3805697 | 4 | |
| Deletion | Chr10 | 5962143 | 5962155 | 12 | |
| Deletion | Chr1 | 7743621 | 7743634 | 13 | |
| Deletion | Chr6 | 8114968 | 8114973 | 5 | |
| Deletion | Chr1 | 13998737 | 13998738 | 1 | |
| Deletion | Chr7 | 16413750 | 16413768 | 18 | |
| Deletion | Chr8 | 17410566 | 17410567 | 1 | |
| Deletion | Chr2 | 17626195 | 17626203 | 8 | |
| Deletion | Chr1 | 18140211 | 18140212 | 1 | |
| Deletion | Chr2 | 19347744 | 19347747 | 3 | |
| Deletion | Chr12 | 19838588 | 19839224 | 636 | |
| Deletion | Chr5 | 19988996 | 19988997 | 1 | |
| Deletion | Chr1 | 20118226 | 20129873 | 11647 | 2 |
| Deletion | Chr2 | 20813228 | 20813229 | 1 | |
| Deletion | Chr8 | 23739674 | 23739679 | 5 | |
| Deletion | Chr3 | 26098770 | 26101977 | 3207 | |
| Deletion | Chr6 | 28548652 | 28548653 | 1 | |
| Deletion | Chr2 | 32000257 | 32000271 | 14 | |
| Deletion | Chr4 | 34895832 | 34895840 | 8 | LOC_Os04g58690 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 28548899 | 28548900 | 2 | |
| Insertion | Chr4 | 34242780 | 34242782 | 3 | LOC_Os04g57550 |
| Insertion | Chr1 | 36382996 | 36382999 | 4 | |
| Insertion | Chr6 | 471949 | 471949 | 1 | |
| Insertion | Chr10 | 18961710 | 18961711 | 2 |
No Inversion
No Translocation