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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	73189	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g01150
SBS	Chr2	35051800	T-A	HET	INTERGENIC
SBS	Chr3	25477630	A-T	HET	INTERGENIC
SBS	Chr3	28218292	C-T	HET	INTERGENIC
SBS	Chr3	30410874	C-A	HET	INTERGENIC
SBS	Chr3	30443987	A-T	HET	INTRON
SBS	Chr3	30443988	C-T	HET	INTRON
SBS	Chr4	3658761	C-A	HET	INTERGENIC
SBS	Chr4	4167957	A-C	HET	INTERGENIC
SBS	Chr5	20549595	A-G	HOMO	INTRON
SBS	Chr5	26904105	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	27200736	T-C	HOMO	INTERGENIC
SBS	Chr6	11383798	G-A	HET	STOP_GAINED	LOC_Os06g19900
SBS	Chr6	29081155	C-T	HET	INTERGENIC
SBS	Chr7	15420549	G-T	HET	INTERGENIC
SBS	Chr7	22316730	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g37240
SBS	Chr8	9834809	A-G	HET	INTERGENIC
SBS	Chr9	12840815	C-T	HET	INTERGENIC
SBS	Chr10	12984084	T-C	HET	INTERGENIC
SBS	Chr10	14813865	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g28470
SBS	Chr10	18124939	C-T	HET	INTERGENIC
SBS	Chr10	21324754	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g39850
SBS	Chr11	8506758	A-T	HET	INTRON
SBS	Chr11	9981274	G-A	HET	INTRON
SBS	Chr11	19484855	C-T	HET	INTERGENIC
SBS	Chr11	20934593	A-G	HET	INTRON
SBS	Chr12	1720970	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g04110
SBS	Chr12	11963502	C-T	HET	INTRON
SBS	Chr12	12348523	C-T	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	883198	883199	1
Deletion	Chr2	944117	944120	3
Deletion	Chr6	1427910	1427911	1
Deletion	Chr12	1645810	1645811	1
Deletion	Chr7	4108625	4108626	1
Deletion	Chr12	5102498	5102500	2
Deletion	Chr1	5671772	5671783	11
Deletion	Chr8	9071932	9071947	15	LOC_Os08g15030
Deletion	Chr9	11482618	11482629	11
Deletion	Chr9	11517172	11517207	35
Deletion	Chr7	13771643	13771644	1
Deletion	Chr9	14163388	14163390	2
Deletion	Chr10	14919012	14919018	6
Deletion	Chr3	16335052	16335062	10
Deletion	Chr1	18730561	18730571	10
Deletion	Chr11	21105232	21105252	20
Deletion	Chr6	22040661	22040663	2	LOC_Os06g37320
Deletion	Chr7	22485286	22485292	6
Deletion	Chr7	22859783	24254699	1394916	231
Deletion	Chr11	22960187	22960188	1
Deletion	Chr5	24162739	24162750	11
Deletion	Chr3	24818469	24818480	11
Deletion	Chr11	25002133	25002547	414
Deletion	Chr7	27059107	27066534	7427	2
Deletion	Chr2	27198304	27198320	16
Deletion	Chr3	30444231	30444232	1
Deletion	Chr6	30711831	30711844	13
Deletion	Chr1	31644733	31649600	4867	LOC_Os01g55040
Deletion	Chr3	33009083	33009090	7
Deletion	Chr1	39197105	39197112	7

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	621465	621466	2
Insertion	Chr4	31490833	31490835	3
Insertion	Chr11	5201898	5201899	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	1628872	4714267	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4714268	Chr1	31649601	LOC_Os08g08240
Translocation	Chr8	5375923	Chr7	27066534	LOC_Os08g09250
Translocation	Chr8	5375926	Chr7	27059111	2
Translocation	Chr7	22859794	Chr3	3886252	LOC_Os07g38120
Translocation	Chr7	24254697	Chr3	3886226	LOC_Os07g40480

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