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| Mutant Information |
|---|
| Mutant Name | FN1188-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1188-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 32429782 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 32481097 | T-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 5048996 | G-T | HET | INTRON | |
| SBS | Chr10 | 5932619 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 14100823 | T-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 1996238 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 997592 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 997593 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 13245934 | T-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 27517627 | G-C | HET | INTERGENIC | |
| SBS | Chr3 | 16024910 | A-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 18107334 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 26678045 | T-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 13888214 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 21340971 | T-C | HET | UTR_5_PRIME | |
| SBS | Chr5 | 20860796 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 22030455 | T-C | HOMO | INTRON | |
| SBS | Chr6 | 17697527 | G-C | HET | INTERGENIC | |
| SBS | Chr7 | 974785 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 13813239 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 8359394 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g13950 |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 5465001 | 5547000 | 82000 | 16 |
| Deletion | Chr2 | 6867869 | 6867872 | 3 | |
| Deletion | Chr5 | 8613982 | 8614004 | 22 | LOC_Os05g15170 |
| Deletion | Chr4 | 9437538 | 9437539 | 1 | |
| Deletion | Chr12 | 12419378 | 12419387 | 9 | LOC_Os12g22070 |
| Deletion | Chr6 | 14241201 | 14241205 | 4 | |
| Deletion | Chr4 | 15289039 | 15289056 | 17 | |
| Deletion | Chr2 | 19456792 | 19456793 | 1 | |
| Deletion | Chr7 | 21007401 | 21007406 | 5 | |
| Deletion | Chr4 | 21435148 | 21435158 | 10 | |
| Deletion | Chr5 | 22750313 | 22750318 | 5 | |
| Deletion | Chr5 | 24045119 | 24045120 | 1 | |
| Deletion | Chr5 | 24151976 | 24179406 | 27430 | 3 |
| Deletion | Chr12 | 25853321 | 25853323 | 2 | |
| Deletion | Chr1 | 33939424 | 33939429 | 5 |
Insertions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 17373426 | 17373426 | 1 | |
| Insertion | Chr11 | 11289798 | 11289798 | 1 | |
| Insertion | Chr11 | 18493101 | 18493101 | 1 | |
| Insertion | Chr11 | 18569862 | 18569863 | 2 | |
| Insertion | Chr2 | 16607553 | 16607554 | 2 | |
| Insertion | Chr2 | 17850754 | 17850755 | 2 | |
| Insertion | Chr2 | 28081723 | 28081724 | 2 | LOC_Os02g46080 |
| Insertion | Chr4 | 27542955 | 27542966 | 12 | |
| Insertion | Chr4 | 3952441 | 3952445 | 5 | |
| Insertion | Chr8 | 27935739 | 27935739 | 1 | |
| Insertion | Chr9 | 10403603 | 10403604 | 2 | |
| Insertion | Chr9 | 5009001 | 5009004 | 4 |
Inversions: 9
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 7800011 | 8000724 | LOC_Os10g15300 |
| Inversion | Chr10 | 7800078 | 8000729 | LOC_Os10g15300 |
| Inversion | Chr5 | 12615512 | 13560490 | |
| Inversion | Chr10 | 18021941 | 18100477 | |
| Inversion | Chr10 | 18121946 | 18681746 | |
| Inversion | Chr10 | 18137453 | 18681203 | |
| Inversion | Chr3 | 19700746 | 19769009 | LOC_Os03g35690 |
| Inversion | Chr5 | 26750570 | 26774533 | |
| Inversion | Chr5 | 26752325 | 26799482 | LOC_Os05g46200 |
No Translocation