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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15944123	T-C	HOMO	INTERGENIC
SBS	Chr1	20798739	G-A	HOMO	STOP_GAINED	LOC_Os01g37240
SBS	Chr1	25933684	C-T	HET	UTR_3_PRIME
SBS	Chr1	36731385	T-C	HOMO	INTERGENIC
SBS	Chr10	6351533	G-A	HOMO	INTERGENIC
SBS	Chr11	17281525	G-A	HET	INTERGENIC
SBS	Chr11	23564310	G-A	HOMO	INTERGENIC
SBS	Chr11	23690950	C-A	HOMO	INTERGENIC
SBS	Chr11	993501	G-A	HET	INTERGENIC
SBS	Chr12	17592068	A-T	HET	INTRON
SBS	Chr2	13714092	T-A	HET	INTERGENIC
SBS	Chr2	14695273	G-A	HOMO	INTERGENIC
SBS	Chr2	7212547	T-A	HET	INTERGENIC
SBS	Chr3	33950072	C-T	HET	INTERGENIC
SBS	Chr4	30530259	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g51540
SBS	Chr4	32798524	G-A	HET	INTERGENIC
SBS	Chr5	14943537	G-C	HET	INTERGENIC
SBS	Chr5	15945042	T-C	HET	INTRON
SBS	Chr5	8825879	C-T	HET	INTRON
SBS	Chr6	21230561	G-A	HOMO	INTRON
SBS	Chr6	28830093	C-T	HET	INTERGENIC
SBS	Chr6	2959765	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr6	9044018	A-G	HET	INTERGENIC
SBS	Chr7	26760017	G-A	HOMO	INTERGENIC
SBS	Chr9	16467817	C-T	HET	INTERGENIC
SBS	Chr9	1975420	T-G	HET	INTRON
SBS	Chr9	2410356	G-A	HET	INTERGENIC
SBS	Chr9	631414	T-A	HET	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1462128	1462159	31	LOC_Os04g03410
Deletion	Chr10	3478370	3478371	1
Deletion	Chr10	6171437	6171452	15
Deletion	Chr8	7445002	7445003	1
Deletion	Chr2	7813249	7813252	3
Deletion	Chr11	8955865	8955873	8
Deletion	Chr3	12296742	12296755	13	LOC_Os03g21520
Deletion	Chr12	12417302	12417311	9
Deletion	Chr2	16720690	16720693	3
Deletion	Chr3	17199527	17199529	2
Deletion	Chr8	20129591	20142010	12419	2
Deletion	Chr4	22240398	22240413	15	LOC_Os04g36840
Deletion	Chr12	22968956	22968958	2
Deletion	Chr3	26617616	26617618	2	LOC_Os03g47050
Deletion	Chr1	41984898	41984926	28	LOC_Os01g72380

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	34781239	34781239	1
Insertion	Chr11	15825930	15825930	1
Insertion	Chr2	18552323	18552324	2
Insertion	Chr4	29973271	29973272	2
Insertion	Chr7	18105309	18105309	1
Insertion	Chr7	6875283	6875283	1
Insertion	Chr8	26530008	26530008	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3232975	4544259	LOC_Os05g08320
Inversion	Chr5	3232996	4544266	LOC_Os05g08320
Inversion	Chr1	5068662	5068791
Inversion	Chr2	10962659	10962798	LOC_Os02g18810
Inversion	Chr6	12787958	14365776	LOC_Os06g24510
Inversion	Chr11	25465768	25466087

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6435433	Chr6	19212533
Translocation	Chr6	12787948	Chr2	18855576
Translocation	Chr6	14365758	Chr2	18854891	LOC_Os06g24510
Translocation	Chr10	18189139	Chr9	1568660	2
Translocation	Chr8	23686714	Chr7	7747970
Translocation	Chr12	27281074	Chr4	20039672
Translocation	Chr12	27281364	Chr4	20039693

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