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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	18761633	A-G	HET	INTERGENIC
SBS	Chr11	16022657	G-T	HET	INTERGENIC
SBS	Chr12	11270727	C-T	HET	INTRON
SBS	Chr12	1995690	C-T	HET	INTERGENIC
SBS	Chr12	20292728	T-C	HET	INTERGENIC
SBS	Chr12	3218827	C-T	HET	INTERGENIC
SBS	Chr2	25442501	T-A	HOMO	INTERGENIC
SBS	Chr2	25442518	A-G	HOMO	INTERGENIC
SBS	Chr2	7903020	C-T	HET	INTRON
SBS	Chr3	16789968	G-A	HOMO	INTERGENIC
SBS	Chr3	27008755	G-C	HOMO	INTERGENIC
SBS	Chr3	9834174	G-A	HET	INTERGENIC
SBS	Chr4	10783852	A-T	HET	SPLICE_SITE_REGION
SBS	Chr4	27296730	C-T	HET	INTERGENIC
SBS	Chr4	28059764	G-A	HET	INTERGENIC
SBS	Chr4	986969	T-A	HET	UTR_3_PRIME
SBS	Chr6	9532881	A-G	HET	INTERGENIC
SBS	Chr7	15646158	C-T	HET	SPLICE_SITE_REGION
SBS	Chr7	15809891	C-A	HET	INTRON
SBS	Chr7	21154405	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g35360
SBS	Chr8	10519098	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	14242329	C-A	HET	INTERGENIC
SBS	Chr8	20635205	C-G	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	870151	870154	3
Deletion	Chr9	1742250	1742263	13	LOC_Os09g03550
Deletion	Chr3	3262059	3264102	2043	LOC_Os03g06510
Deletion	Chr4	4650064	4650065	1
Deletion	Chr10	7350967	7350970	3
Deletion	Chr10	8557333	8557339	6
Deletion	Chr12	9381145	9381149	4	LOC_Os12g16380
Deletion	Chr9	14039546	14039547	1
Deletion	Chr7	15652920	15652934	14
Deletion	Chr3	15940989	15941010	21	LOC_Os03g27800
Deletion	Chr10	17171037	17171048	11	LOC_Os10g32790
Deletion	Chr2	17930528	17930540	12
Deletion	Chr2	20517866	20517868	2
Deletion	Chr7	21156624	21157304	680	LOC_Os07g35370
Deletion	Chr8	22763478	22763487	9	LOC_Os08g36130
Deletion	Chr7	24648579	24648608	29
Deletion	Chr1	30142777	30142780	3
Deletion	Chr1	31676828	31676851	23
Deletion	Chr1	31898783	31898793	10
Deletion	Chr1	41689740	41689754	14

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	5320508	5320508	1
Insertion	Chr11	871553	871554	2
Insertion	Chr5	1777970	1777970	1
Insertion	Chr5	5166353	5166354	2
Insertion	Chr6	22279922	22279923	2
Insertion	Chr6	26153097	26153099	3
Insertion	Chr8	20085411	20085412	2
Insertion	Chr8	9966151	9966153	3

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3032457	3164813	2
Inversion	Chr3	3262060	32540893	2
Inversion	Chr3	3263798	32540893	2
Inversion	Chr1	26131385	26403577

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	3264095	Chr1	26403577	LOC_Os03g06510
Translocation	Chr4	11225421	Chr3	25765575
Translocation	Chr7	21156629	Chr1	26942412	LOC_Os07g35370
Translocation	Chr7	21157303	Chr1	26136064	LOC_Os07g35370

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