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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25857218	A-G	HET	INTERGENIC
SBS	Chr10	17238789	T-A	HET	INTERGENIC
SBS	Chr10	8390090	G-A	HOMO	INTERGENIC
SBS	Chr10	8408472	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	9589519	C-T	HET	INTERGENIC
SBS	Chr12	16938955	T-C	HOMO	INTERGENIC
SBS	Chr12	21558925	C-T	HET	INTRON
SBS	Chr12	343085	T-A	HET	INTERGENIC
SBS	Chr2	15391046	C-G	HOMO	INTERGENIC
SBS	Chr2	22496060	C-T	HET	STOP_GAINED	LOC_Os02g37230
SBS	Chr2	9357543	C-A	HET	INTERGENIC
SBS	Chr2	9398748	A-G	HOMO	INTERGENIC
SBS	Chr3	24340384	G-C	HOMO	INTERGENIC
SBS	Chr3	35005040	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g61750
SBS	Chr4	10878421	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	20099815	C-A	HET	UTR_3_PRIME
SBS	Chr4	22171790	A-T	HET	INTERGENIC
SBS	Chr4	27620660	T-C	HET	INTERGENIC
SBS	Chr4	32079662	C-A	HET	INTRON
SBS	Chr4	4466505	C-T	HET	INTERGENIC
SBS	Chr4	8059781	C-G	HET	INTERGENIC
SBS	Chr5	11273821	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19410
SBS	Chr5	14519585	G-A	HOMO	STOP_GAINED	LOC_Os05g25075
SBS	Chr5	19440501	G-T	HOMO	INTERGENIC
SBS	Chr5	22591086	C-T	HET	INTERGENIC
SBS	Chr5	4749572	G-C	HET	INTERGENIC
SBS	Chr6	15291845	C-A	HET	INTRON
SBS	Chr6	21250340	C-T	HET	INTERGENIC
SBS	Chr6	27083294	G-C	HOMO	INTERGENIC
SBS	Chr7	14458177	A-G	HET	INTRON
SBS	Chr7	27634002	T-A	HOMO	INTERGENIC
SBS	Chr7	27634009	G-A	HOMO	INTERGENIC
SBS	Chr7	28769454	A-G	HOMO	INTERGENIC
SBS	Chr8	11862572	C-T	HOMO	INTERGENIC

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	77056	77071	15
Deletion	Chr7	906755	906757	2
Deletion	Chr8	1387124	1387133	9
Deletion	Chr1	1500162	1500167	5	LOC_Os01g03640
Deletion	Chr12	2008815	2008816	1
Deletion	Chr8	3744297	3744305	8	LOC_Os08g06640
Deletion	Chr6	5030961	5030962	1
Deletion	Chr7	5072529	5072539	10
Deletion	Chr2	9397425	9397429	4
Deletion	Chr11	10258847	10258856	9	LOC_Os11g18194
Deletion	Chr1	11453312	11453315	3
Deletion	Chr1	12384718	12384726	8
Deletion	Chr4	12456617	12456623	6	LOC_Os04g22000
Deletion	Chr7	14472456	14472459	3
Deletion	Chr7	15090901	15090909	8	LOC_Os07g26230
Deletion	Chr5	15651126	15651128	2
Deletion	Chr12	16287401	16287411	10
Deletion	Chr7	16637466	16637472	6
Deletion	Chr7	22866074	22866083	9
Deletion	Chr3	23021974	23021979	5
Deletion	Chr8	24747735	24747743	8
Deletion	Chr12	24919715	24919729	14
Deletion	Chr8	25030865	25030878	13
Deletion	Chr7	26155505	26155910	405	LOC_Os07g43700
Deletion	Chr8	27479812	27479822	10	LOC_Os08g43440
Deletion	Chr7	27514313	27514324	11
Deletion	Chr2	27808932	27808943	11
Deletion	Chr2	27833212	27833213	1
Deletion	Chr4	27944235	27944239	4
Deletion	Chr7	28570149	28570156	7
Deletion	Chr7	28840001	28878000	38000	5
Deletion	Chr3	32099332	32099333	1
Deletion	Chr2	33355568	33355569	1
Deletion	Chr1	34910844	34910845	1	LOC_Os01g60350

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	16367368	16367369	2
Insertion	Chr12	23123382	23123386	5
Insertion	Chr12	25804867	25804870	4
Insertion	Chr2	28012238	28012239	2
Insertion	Chr4	16786970	16786971	2
Insertion	Chr7	12851170	12851171	2
Insertion	Chr7	5268745	5268746	2
Insertion	Chr7	6369316	6369317	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2440444	2980854
Inversion	Chr8	24530378	24585668

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	14223729	Chr10	19141714
Translocation	Chr9	20238904	Chr7	28877537	2
Translocation	Chr9	20238913	Chr7	28839877	LOC_Os09g34280

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