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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16821881	C-T	HET	INTERGENIC
SBS	Chr1	28205993	A-T	HOMO	INTERGENIC
SBS	Chr1	28681884	T-C	HET	INTERGENIC
SBS	Chr1	28683683	T-A	HET	INTERGENIC
SBS	Chr10	11660991	C-T	HET	INTERGENIC
SBS	Chr10	1752726	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g03855
SBS	Chr10	7101634	C-T	HET	STOP_GAINED	LOC_Os10g12730
SBS	Chr10	8461801	G-A	HOMO	INTERGENIC
SBS	Chr11	20711333	G-A	HET	INTRON
SBS	Chr11	24994204	A-G	HET	INTERGENIC
SBS	Chr12	10158061	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g17740
SBS	Chr12	11102992	C-T	HET	INTERGENIC
SBS	Chr12	7299139	T-A	HET	INTRON
SBS	Chr2	11483564	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g19640
SBS	Chr2	17185826	G-T	HET	INTRON
SBS	Chr2	2314944	C-T	HOMO	UTR_3_PRIME
SBS	Chr2	34064845	C-T	HOMO	INTERGENIC
SBS	Chr2	9866120	C-T	HET	INTERGENIC
SBS	Chr3	10090292	C-A	HOMO	UTR_3_PRIME
SBS	Chr3	11911917	C-T	HOMO	INTERGENIC
SBS	Chr3	11911918	A-T	HOMO	INTERGENIC
SBS	Chr3	15779830	G-A	HOMO	INTERGENIC
SBS	Chr3	4430011	T-C	HET	INTRON
SBS	Chr4	24750525	G-C	HOMO	INTERGENIC
SBS	Chr4	561836	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g01890
SBS	Chr5	9966649	G-A	HOMO	INTRON
SBS	Chr6	15199099	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g25960
SBS	Chr6	4474661	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g08890
SBS	Chr7	12472711	G-A	HET	INTERGENIC
SBS	Chr7	24148303	G-T	HET	INTERGENIC
SBS	Chr7	27358506	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g45840
SBS	Chr7	7502150	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g13100
SBS	Chr8	10207433	A-G	HET	INTERGENIC
SBS	Chr8	5465877	G-C	HET	INTERGENIC
SBS	Chr8	7524896	G-A	HET	INTERGENIC
SBS	Chr9	18353547	G-A	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	37048	37055	7
Deletion	Chr8	1474157	1474178	21
Deletion	Chr6	3611908	3611916	8
Deletion	Chr3	4204168	4204171	3	LOC_Os03g08270
Deletion	Chr9	6547001	6628000	81000	10
Deletion	Chr8	7743055	7743056	1
Deletion	Chr10	9005111	9005121	10
Deletion	Chr3	9539577	9539688	111
Deletion	Chr6	10134044	10134045	1
Deletion	Chr11	13620120	13622103	1983
Deletion	Chr8	13756319	13758181	1862
Deletion	Chr10	17210951	17210952	1
Deletion	Chr8	18532540	18532563	23
Deletion	Chr10	19067801	19067816	15	LOC_Os10g35650
Deletion	Chr10	19341003	19341011	8
Deletion	Chr6	20320987	20320997	10
Deletion	Chr2	20921507	20921508	1	LOC_Os02g34884
Deletion	Chr1	21744740	21744751	11
Deletion	Chr9	22592251	22592252	1
Deletion	Chr8	23146456	23146457	1
Deletion	Chr7	24032023	24032031	8
Deletion	Chr4	24425027	24425053	26
Deletion	Chr11	26549001	26584000	35000	6
Deletion	Chr1	28289332	28289338	6
Deletion	Chr7	29072714	29072719	5
Deletion	Chr1	30791862	30791867	5	LOC_Os01g53630
Deletion	Chr3	33701971	33701972	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	2611697	2611700	4
Insertion	Chr3	181913	181914	2
Insertion	Chr8	10173562	10173563	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	11520916	12003241

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1631027	Chr2	30991348	LOC_Os12g03940
Translocation	Chr9	6546359	Chr4	32602088	2
Translocation	Chr9	6628231	Chr4	32602362	LOC_Os04g54820
Translocation	Chr11	9031546	Chr7	23098246
Translocation	Chr7	27991710	Chr4	32602326	2
Translocation	Chr7	27991726	Chr4	33052298	LOC_Os07g46830

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