Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN1202-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1202-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 30756261 | A-C | HET | INTRON | |
| SBS | Chr1 | 3236582 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g06820 |
| SBS | Chr10 | 19062181 | T-C | HET | INTERGENIC | |
| SBS | Chr10 | 5993743 | C-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr11 | 10406911 | C-G | HOMO | INTERGENIC | |
| SBS | Chr11 | 18838613 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 28882071 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 10270933 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 13053707 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 15719080 | A-C | HET | INTERGENIC | |
| SBS | Chr12 | 27405201 | C-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 20355727 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 2284005 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 22335476 | T-C | HET | INTERGENIC | |
| SBS | Chr3 | 22926593 | T-A | HET | INTERGENIC | |
| SBS | Chr3 | 27953982 | T-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 30157618 | C-T | HOMO | INTRON | |
| SBS | Chr4 | 27136357 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 12804950 | G-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 19675339 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g33490 |
| SBS | Chr5 | 21044982 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 7861525 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 8147492 | C-A | HET | INTERGENIC | |
| SBS | Chr5 | 8508313 | G-T | HET | INTERGENIC | |
| SBS | Chr6 | 11727587 | C-T | HET | INTRON | |
| SBS | Chr6 | 19476836 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 20932198 | A-G | HET | INTRON | |
| SBS | Chr6 | 24233784 | G-A | HET | INTRON | |
| SBS | Chr6 | 26234669 | A-G | HET | INTERGENIC | |
| SBS | Chr6 | 27291162 | G-C | HOMO | SPLICE_SITE_REGION | |
| SBS | Chr7 | 8563563 | A-G | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr8 | 12754834 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g21380 |
| SBS | Chr8 | 16985854 | A-G | HOMO | INTERGENIC | |
| SBS | Chr9 | 11231408 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 11379882 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 18233731 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 3997712 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g07860 |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 2235461 | 2235474 | 13 | |
| Deletion | Chr7 | 2732147 | 2732148 | 1 | |
| Deletion | Chr3 | 3463316 | 3463333 | 17 | |
| Deletion | Chr5 | 6941567 | 6941599 | 32 | |
| Deletion | Chr10 | 10403522 | 10403532 | 10 | |
| Deletion | Chr6 | 14378779 | 14378783 | 4 | |
| Deletion | Chr5 | 19994026 | 19994035 | 9 | LOC_Os05g33890 |
| Deletion | Chr3 | 20082544 | 20082548 | 4 | |
| Deletion | Chr5 | 20777354 | 20777357 | 3 | |
| Deletion | Chr4 | 21206448 | 21206459 | 11 | |
| Deletion | Chr5 | 22735047 | 22735048 | 1 | |
| Deletion | Chr7 | 23935950 | 23935997 | 47 | |
| Deletion | Chr1 | 24550409 | 24550410 | 1 | |
| Deletion | Chr2 | 32914858 | 32914859 | 1 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 8139732 | 8139733 | 2 | |
| Insertion | Chr10 | 2941715 | 2941717 | 3 | |
| Insertion | Chr2 | 1417698 | 1417699 | 2 | LOC_Os02g03480 |
| Insertion | Chr2 | 938616 | 938616 | 1 | LOC_Os02g02590 |
| Insertion | Chr4 | 7471318 | 7471318 | 1 | |
| Insertion | Chr5 | 27863457 | 27863460 | 4 | |
| Insertion | Chr7 | 25221115 | 25221116 | 2 |
No Inversion
No Translocation