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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16874761	C-A	HET	INTRON
SBS	Chr1	17305586	C-G	HET	INTERGENIC
SBS	Chr1	17805376	C-A	HET	INTERGENIC
SBS	Chr10	16263497	G-T	HET	INTERGENIC
SBS	Chr11	11159657	G-T	HOMO	INTERGENIC
SBS	Chr11	11693538	C-T	HOMO	INTRON
SBS	Chr11	16048319	C-T	HOMO	INTERGENIC
SBS	Chr11	5826316	C-G	HOMO	SYNONYMOUS_CODING
SBS	Chr12	1898014	C-T	HOMO	INTRON
SBS	Chr12	19843113	G-A	HET	INTERGENIC
SBS	Chr12	22929920	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g37340
SBS	Chr12	24936367	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g40279
SBS	Chr12	9184284	G-C	HET	INTERGENIC
SBS	Chr2	15037288	C-A	HET	INTERGENIC
SBS	Chr2	29447619	C-T	HET	INTERGENIC
SBS	Chr2	31819948	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g51960
SBS	Chr2	6658989	A-C	HOMO	SYNONYMOUS_CODING
SBS	Chr4	19398925	A-G	HET	SYNONYMOUS_CODING
SBS	Chr4	841222	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g02360
SBS	Chr5	1561712	T-C	HET	INTERGENIC
SBS	Chr6	19686118	C-T	HOMO	INTERGENIC
SBS	Chr6	2617627	C-T	HOMO	INTRON
SBS	Chr7	13064361	G-A	HET	INTRON
SBS	Chr7	13064362	G-A	HET	INTRON
SBS	Chr7	13064365	T-G	HET	INTRON
SBS	Chr7	13441996	A-C	HET	INTRON
SBS	Chr7	23583843	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g39350
SBS	Chr8	21138081	G-T	HET	INTERGENIC
SBS	Chr9	9767804	T-A	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	819482	819483	1
Deletion	Chr2	4372615	4372639	24
Deletion	Chr11	5344365	5344387	22
Deletion	Chr6	6146092	6146100	8
Deletion	Chr9	6586437	6586439	2
Deletion	Chr1	7057927	7057955	28
Deletion	Chr7	7319375	7319541	166
Deletion	Chr11	7855766	8455582	599816	91
Deletion	Chr6	14191696	14975572	783876	125
Deletion	Chr1	14796914	14796920	6	LOC_Os01g26120
Deletion	Chr11	16013699	16013706	7	LOC_Os11g27810
Deletion	Chr4	19407536	19407538	2
Deletion	Chr9	19595728	19595729	1
Deletion	Chr8	21367264	21367265	1	LOC_Os08g34080
Deletion	Chr8	21955623	21955624	1
Deletion	Chr1	24191641	24191662	21
Deletion	Chr2	24565118	24565119	1
Deletion	Chr2	25408083	25408089	6

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11300722	11300725	4
Insertion	Chr1	1677692	1677695	4
Insertion	Chr12	22727548	22727548	1
Insertion	Chr12	27092823	27092824	2
Insertion	Chr7	11740182	11740183	2
Insertion	Chr8	5877675	5877676	2
Insertion	Chr9	13099440	13099441	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	8455579	11274598
Inversion	Chr11	11274605	11544772

No Translocation

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