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| Mutant Information |
|---|
| Mutant Name | FN1205-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1205-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12017900 | T-G | HET | INTERGENIC | |
| SBS | Chr1 | 16192568 | A-G | HET | INTERGENIC | |
| SBS | Chr1 | 3972419 | G-T | HET | INTERGENIC | |
| SBS | Chr1 | 4013734 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 20313794 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 3417406 | A-T | HET | INTERGENIC | |
| SBS | Chr11 | 9232257 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 192529 | C-T | HET | INTRON | |
| SBS | Chr12 | 22672242 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 18405262 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 31384295 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 2652441 | G-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr3 | 32338465 | A-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 3850618 | T-C | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr4 | 12916927 | T-G | HET | INTRON | |
| SBS | Chr4 | 14852069 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 14852070 | T-G | HET | INTERGENIC | |
| SBS | Chr4 | 5437650 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g10070 |
| SBS | Chr5 | 19335242 | G-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 25337214 | T-G | HET | INTRON | |
| SBS | Chr5 | 2867595 | C-T | HET | INTRON | |
| SBS | Chr5 | 6962491 | A-C | HOMO | INTRON | |
| SBS | Chr6 | 15700473 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g27720 |
| SBS | Chr8 | 22811119 | C-T | HOMO | INTRON | |
| SBS | Chr9 | 21124211 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 9360103 | G-A | HOMO | INTRON |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 616332 | 616333 | 1 | |
| Deletion | Chr5 | 2523551 | 2523552 | 1 | LOC_Os05g05180 |
| Deletion | Chr11 | 2741562 | 2741566 | 4 | |
| Deletion | Chr9 | 4230939 | 4230944 | 5 | |
| Deletion | Chr11 | 7943570 | 7943571 | 1 | |
| Deletion | Chr1 | 9110056 | 9110057 | 1 | |
| Deletion | Chr11 | 11428720 | 11428732 | 12 | |
| Deletion | Chr6 | 17191553 | 17191554 | 1 | |
| Deletion | Chr2 | 19114588 | 19114590 | 2 | |
| Deletion | Chr10 | 20406435 | 20406448 | 13 | |
| Deletion | Chr10 | 20754925 | 20754933 | 8 | |
| Deletion | Chr7 | 21780110 | 21780111 | 1 | |
| Deletion | Chr12 | 23892370 | 23892378 | 8 | |
| Deletion | Chr6 | 26260823 | 26260829 | 6 | |
| Deletion | Chr5 | 27548346 | 27548348 | 2 | LOC_Os05g48050 |
| Deletion | Chr2 | 27646126 | 27646136 | 10 | |
| Deletion | Chr2 | 28903979 | 28904011 | 32 | LOC_Os02g47340 |
| Deletion | Chr3 | 33069191 | 33069195 | 4 | LOC_Os03g58080 |
| Deletion | Chr2 | 34262316 | 34262332 | 16 | |
| Deletion | Chr3 | 34655300 | 34655306 | 6 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 4399471 | 4399471 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 1002280 | 10874686 | LOC_Os11g02910 |
No Translocation