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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1963921	T-A	HET	INTRON
SBS	Chr1	37752743	G-T	HOMO	INTERGENIC
SBS	Chr1	37752744	C-T	HOMO	INTERGENIC
SBS	Chr10	15730673	G-A	HET	UTR_5_PRIME
SBS	Chr10	20692369	G-A	HOMO	INTERGENIC
SBS	Chr10	4628152	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g08530
SBS	Chr11	599147	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g02159
SBS	Chr12	17081172	T-G	HET	INTRON
SBS	Chr12	5789926	C-T	HET	INTERGENIC
SBS	Chr2	13928614	G-A	HET	INTERGENIC
SBS	Chr2	4504761	G-A	HET	INTERGENIC
SBS	Chr3	106203	A-G	HET	INTERGENIC
SBS	Chr3	23532069	A-T	HOMO	INTERGENIC
SBS	Chr3	448913	G-A	HET	INTERGENIC
SBS	Chr4	10146879	G-A	HOMO	INTRON
SBS	Chr4	33064021	G-A	HET	UTR_3_PRIME
SBS	Chr4	4243836	G-A	HET	STOP_GAINED	LOC_Os04g07970
SBS	Chr4	4408801	C-T	HET	INTERGENIC
SBS	Chr4	4408802	A-T	HET	INTERGENIC
SBS	Chr4	9413804	G-A	HOMO	INTERGENIC
SBS	Chr6	2321629	C-A	HET	INTRON
SBS	Chr6	24190990	G-A	HET	INTRON
SBS	Chr7	16035335	G-T	HOMO	INTERGENIC
SBS	Chr7	23483863	T-A	HET	UTR_3_PRIME
SBS	Chr7	2915642	G-A	HET	INTRON
SBS	Chr7	5906560	A-T	HET	INTERGENIC
SBS	Chr8	22482605	T-A	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	3618425	3618438	13	LOC_Os03g07080
Deletion	Chr4	4264991	4265007	16
Deletion	Chr11	6095065	6095067	2
Deletion	Chr4	7720493	7720494	1
Deletion	Chr6	8836450	8836451	1
Deletion	Chr4	9068104	9068112	8
Deletion	Chr9	10404784	10405385	601	LOC_Os09g17000
Deletion	Chr4	10806975	10806976	1
Deletion	Chr7	10901653	10930260	28607	5
Deletion	Chr7	11811028	11811032	4
Deletion	Chr7	13177902	13177908	6
Deletion	Chr10	14283838	14283847	9
Deletion	Chr6	20708656	20708657	1
Deletion	Chr6	26205380	26205386	6
Deletion	Chr3	28070267	28070269	2
Deletion	Chr5	29263286	29263287	1
Deletion	Chr1	30607178	30607184	6
Deletion	Chr1	35696472	35696475	3

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	3341686	3341687	2
Insertion	Chr3	18491419	18491419	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	10442978	10930246	LOC_Os07g17689
Inversion	Chr7	13019558	13040502	LOC_Os07g23080
Inversion	Chr7	13147734	13175863	LOC_Os07g23370
Inversion	Chr7	13147783	13175899	LOC_Os07g23370
Inversion	Chr7	20347203	20902595	LOC_Os07g34030

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	2315467	Chr5	27192304	LOC_Os05g47450
Translocation	Chr6	2322025	Chr5	27192304	2
Translocation	Chr11	17698147	Chr5	22429613
Translocation	Chr11	24269459	Chr1	23524841

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