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Mutant Information

Mutant Name	FN1210-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1210-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	38023960	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	7489181	C-T	HOMO	INTERGENIC
SBS	Chr10	11852717	C-T	HOMO	INTERGENIC
SBS	Chr11	23338386	A-T	HOMO	INTERGENIC
SBS	Chr11	3053934	T-G	HET	INTERGENIC
SBS	Chr12	1373905	A-G	HET	INTRON
SBS	Chr12	16938955	T-C	HOMO	INTERGENIC
SBS	Chr12	24758534	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr12	3572152	G-A	HET	INTERGENIC
SBS	Chr12	5356144	G-A	HET	INTERGENIC
SBS	Chr2	17611469	C-T	HOMO	INTRON
SBS	Chr2	5671490	C-A	HET	INTRON
SBS	Chr3	21076250	G-T	HET	INTERGENIC
SBS	Chr3	27334044	C-G	HOMO	INTERGENIC
SBS	Chr4	4685042	C-G	HOMO	INTERGENIC
SBS	Chr4	8656467	G-A	HOMO	INTERGENIC
SBS	Chr5	5365121	G-C	HET	INTERGENIC
SBS	Chr9	12396084	C-T	HOMO	INTERGENIC
SBS	Chr9	18098001	A-T	HET	INTRON

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	658316	658317	1
Deletion	Chr7	4770801	4770806	5
Deletion	Chr9	5216090	5216100	10
Deletion	Chr7	7521033	7521041	8
Deletion	Chr9	8184257	8184258	1	LOC_Os09g13900
Deletion	Chr11	9659954	9659959	5
Deletion	Chr4	10923248	10923249	1	LOC_Os04g19610
Deletion	Chr10	14846858	14846865	7
Deletion	Chr6	15016001	15133000	117000	18
Deletion	Chr11	15334269	15334271	2
Deletion	Chr1	16221287	16221291	4
Deletion	Chr1	19043936	19047784	3848
Deletion	Chr2	20588840	20588845	5	LOC_Os02g34410
Deletion	Chr1	21125132	21125140	8	LOC_Os01g37770
Deletion	Chr8	25062350	25062385	35	LOC_Os08g39590
Deletion	Chr2	28674761	28674772	11
Deletion	Chr1	35028657	35028659	2

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	23031409	23031410	2
Insertion	Chr11	27585620	27585621	2
Insertion	Chr11	6137372	6137373	2
Insertion	Chr2	21749489	21749489	1
Insertion	Chr4	1879469	1879469	1
Insertion	Chr5	13864207	13864207	1
Insertion	Chr5	23481989	23481990	2
Insertion	Chr6	30384306	30384306	1
Insertion	Chr9	7044170	7044170	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	5942813	8171852	LOC_Os05g10770
Inversion	Chr11	23730500	23821009
Inversion	Chr11	23736581	23820989

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	13455975	Chr4	9485995
Translocation	Chr6	15132873	Chr5	8171439
Translocation	Chr9	16737936	Chr7	1125154	LOC_Os09g27540