Search Results
| Mutant Information |
|---|
| Mutant Name | FN1211-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1211-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12758482 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 14350109 | G-A | HET | INTRON | |
| SBS | Chr1 | 19381213 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g35030 |
| SBS | Chr2 | 35079977 | T-C | HET | INTERGENIC | |
| SBS | Chr3 | 9623973 | T-C | HOMO | SPLICE_SITE_REGION | |
| SBS | Chr4 | 10992791 | A-G | HOMO | INTRON | |
| SBS | Chr4 | 17366307 | C-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g29290 |
| SBS | Chr5 | 9047756 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 17134213 | T-C | HET | INTERGENIC | |
| SBS | Chr5 | 17565761 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 19864657 | C-G | HOMO | INTERGENIC | |
| SBS | Chr7 | 19234667 | G-T | HOMO | INTRON | |
| SBS | Chr7 | 19234669 | A-T | HOMO | INTRON | |
| SBS | Chr8 | 11362856 | G-T | HOMO | INTRON | |
| SBS | Chr8 | 16172165 | G-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 21614163 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 21614166 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 20722068 | T-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 2999061 | C-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 13507695 | T-C | HET | INTERGENIC | |
| SBS | Chr12 | 19773272 | C-G | HET | INTERGENIC |
Deletions: 25
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 1442260 | 1442261 | 1 | |
| Deletion | Chr6 | 3264128 | 3264131 | 3 | LOC_Os06g06880 |
| Deletion | Chr11 | 3509359 | 3509360 | 1 | LOC_Os11g07050 |
| Deletion | Chr12 | 4794312 | 4794313 | 1 | |
| Deletion | Chr11 | 5677372 | 5679335 | 1963 | |
| Deletion | Chr6 | 6470811 | 6470817 | 6 | |
| Deletion | Chr5 | 9663455 | 9663475 | 20 | LOC_Os05g16950 |
| Deletion | Chr4 | 10992805 | 10993070 | 265 | |
| Deletion | Chr2 | 11098962 | 11098963 | 1 | |
| Deletion | Chr8 | 11402850 | 11422748 | 19898 | 3 |
| Deletion | Chr5 | 13255168 | 13255264 | 96 | |
| Deletion | Chr11 | 13681663 | 13681680 | 17 | |
| Deletion | Chr11 | 14163728 | 14163737 | 9 | |
| Deletion | Chr1 | 14356652 | 14356653 | 1 | LOC_Os01g25386 |
| Deletion | Chr4 | 17358569 | 17358571 | 2 | |
| Deletion | Chr9 | 19413442 | 19413449 | 7 | LOC_Os09g32520 |
| Deletion | Chr9 | 21136384 | 21136390 | 6 | LOC_Os09g36630 |
| Deletion | Chr9 | 21570274 | 21570322 | 48 | LOC_Os09g37344 |
| Deletion | Chr5 | 22348278 | 22348279 | 1 | |
| Deletion | Chr11 | 24739208 | 24739209 | 1 | |
| Deletion | Chr8 | 25567367 | 25567368 | 1 | LOC_Os08g40390 |
| Deletion | Chr6 | 26084093 | 26084106 | 13 | |
| Deletion | Chr5 | 28914592 | 28914597 | 5 | LOC_Os05g50440 |
| Deletion | Chr1 | 30216001 | 30259000 | 43000 | 7 |
| Deletion | Chr1 | 35641297 | 35641306 | 9 |
Insertions: 5
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 15412836 | 15535504 |
No Translocation