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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21079068	C-A	HOMO	INTRON
SBS	Chr1	23430748	G-A	HOMO	INTERGENIC
SBS	Chr1	2520175	T-A	HET	INTERGENIC
SBS	Chr1	30089231	T-A	HOMO	INTERGENIC
SBS	Chr1	5684422	T-C	HET	INTERGENIC
SBS	Chr11	3057724	A-C	HOMO	INTERGENIC
SBS	Chr11	7391556	G-T	HOMO	INTERGENIC
SBS	Chr12	1535574	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	17569240	A-T	HET	INTERGENIC
SBS	Chr12	26498362	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g42630
SBS	Chr12	3082450	G-A	HET	INTRON
SBS	Chr2	3891138	T-C	HET	SYNONYMOUS_CODING
SBS	Chr3	1951916	T-G	HET	INTERGENIC
SBS	Chr3	20125116	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g36279
SBS	Chr3	33122697	C-T	HOMO	INTERGENIC
SBS	Chr3	7171370	C-T	HET	INTERGENIC
SBS	Chr4	10136687	C-A	HOMO	INTRON
SBS	Chr4	2348137	G-A	HOMO	INTERGENIC
SBS	Chr4	4122763	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	1915288	T-A	HET	INTERGENIC
SBS	Chr5	19473398	T-G	HET	INTERGENIC
SBS	Chr5	21255140	T-G	HET	INTERGENIC
SBS	Chr5	9344531	T-G	HET	INTERGENIC
SBS	Chr6	10077526	A-T	HOMO	INTERGENIC
SBS	Chr6	17447440	A-T	HOMO	INTERGENIC
SBS	Chr6	29159055	C-T	HOMO	INTERGENIC
SBS	Chr6	5830808	G-C	HOMO	INTERGENIC
SBS	Chr7	17399975	C-T	HET	UTR_5_PRIME
SBS	Chr7	17399976	C-T	HET	UTR_5_PRIME
SBS	Chr7	17399977	C-T	HET	START_GAINED	LOC_Os07g29600
SBS	Chr8	13740200	A-G	HET	UTR_3_PRIME
SBS	Chr8	20574369	G-A	HOMO	INTERGENIC
SBS	Chr8	20574370	G-A	HOMO	INTERGENIC
SBS	Chr8	22457172	C-T	HET	INTERGENIC
SBS	Chr8	25357486	T-C	HET	INTRON
SBS	Chr8	3645113	G-A	HET	INTERGENIC
SBS	Chr9	13901185	G-A	HET	INTERGENIC
SBS	Chr9	21419153	G-A	HOMO	INTERGENIC
SBS	Chr9	4206769	C-T	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	163652	163659	7
Deletion	Chr12	771835	771839	4
Deletion	Chr12	859324	859334	10	LOC_Os12g02520
Deletion	Chr12	1094964	1094973	9
Deletion	Chr10	1632346	1632348	2	LOC_Os10g03660
Deletion	Chr5	1915283	1915284	1
Deletion	Chr12	1949714	1949715	1	LOC_Os12g04610
Deletion	Chr8	2942341	3018345	76004	14
Deletion	Chr6	4466133	4466134	1
Deletion	Chr5	7788001	8022000	234000	29
Deletion	Chr8	10819410	10819414	4
Deletion	Chr5	12099918	12099924	6	LOC_Os05g20620
Deletion	Chr8	14344382	14344391	9
Deletion	Chr10	14628250	14628253	3
Deletion	Chr2	17644490	17644495	5
Deletion	Chr5	17829070	17829071	1
Deletion	Chr10	18899571	18899572	1
Deletion	Chr7	19026030	19026032	2
Deletion	Chr11	19245687	19245718	31
Deletion	Chr5	20372001	20430000	58000	7
Deletion	Chr7	20881824	20881825	1	LOC_Os07g34840
Deletion	Chr2	26353002	26353011	9	LOC_Os02g43670
Deletion	Chr6	28982661	28982662	1
Deletion	Chr2	31089299	31089311	12	LOC_Os02g50870
Deletion	Chr4	31409347	31409353	6

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	17811477	17811478	2
Insertion	Chr1	41964925	41964925	1
Insertion	Chr3	26816364	26816370	7
Insertion	Chr8	15238874	15238875	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	6641008	6655885
Inversion	Chr4	9861855	10427402
Inversion	Chr9	10161664	10908042	LOC_Os09g17830
Inversion	Chr5	23104037	24564975	LOC_Os05g39380
Inversion	Chr5	28262324	28402034

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	7922203	Chr4	9861884
Translocation	Chr11	12699557	Chr7	14859313	LOC_Os11g22130
Translocation	Chr5	20431787	Chr4	10427339

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