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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1830135	A-T	HET	INTERGENIC
SBS	Chr1	3384573	G-A	HET	INTERGENIC
SBS	Chr1	7272613	A-T	HOMO	UTR_3_PRIME
SBS	Chr1	10442044	G-A	HOMO	INTERGENIC
SBS	Chr1	12674053	T-C	HOMO	INTERGENIC
SBS	Chr1	15672594	G-A	HOMO	UTR_3_PRIME
SBS	Chr1	28719038	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g49980
SBS	Chr1	29474234	C-T	HET	INTERGENIC
SBS	Chr1	29692347	C-T	HET	INTERGENIC
SBS	Chr1	34392738	C-T	HOMO	INTERGENIC
SBS	Chr2	8129177	C-T	HET	INTERGENIC
SBS	Chr2	9957685	T-C	HET	INTERGENIC
SBS	Chr3	15080629	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	32475948	G-A	HET	INTERGENIC
SBS	Chr4	30138716	C-A	HET	INTERGENIC
SBS	Chr5	213019	G-T	HET	INTERGENIC
SBS	Chr5	22013302	G-C	HET	INTERGENIC
SBS	Chr5	29541654	T-C	HET	UTR_5_PRIME
SBS	Chr6	12937020	A-C	HET	INTERGENIC
SBS	Chr6	14450813	C-G	HET	INTERGENIC
SBS	Chr6	31099898	G-A	HOMO	INTERGENIC
SBS	Chr6	31099900	G-A	HOMO	INTERGENIC
SBS	Chr7	26750819	A-G	HET	INTERGENIC
SBS	Chr7	27722309	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g46450
SBS	Chr8	873314	C-T	HOMO	INTERGENIC
SBS	Chr8	2588837	A-C	HOMO	INTERGENIC
SBS	Chr8	5837731	C-A	HET	INTERGENIC
SBS	Chr9	5097690	A-G	HET	INTRON
SBS	Chr9	8076392	T-G	HET	INTERGENIC
SBS	Chr9	13098266	T-A	HET	INTERGENIC
SBS	Chr10	9409951	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g18550
SBS	Chr10	9409952	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr10	12753303	C-T	HOMO	INTERGENIC
SBS	Chr11	11088135	G-A	HET	INTERGENIC
SBS	Chr11	11863560	T-G	HET	INTRON
SBS	Chr11	14350817	G-T	HET	INTERGENIC
SBS	Chr12	14375785	T-C	HOMO	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	2312105	2312113	8
Deletion	Chr12	3348714	3348717	3
Deletion	Chr12	3485339	3485345	6
Deletion	Chr12	3558690	3558711	21
Deletion	Chr3	5209306	5209311	5
Deletion	Chr9	8226543	8226548	5
Deletion	Chr5	8714001	9111000	397000	66
Deletion	Chr5	9123001	9697000	574000	81
Deletion	Chr8	9428264	9428273	9	LOC_Os08g15500
Deletion	Chr5	9704001	9762000	58000	11
Deletion	Chr5	9770001	9873000	103000	15
Deletion	Chr12	11261981	11261982	1
Deletion	Chr6	11499324	11499330	6
Deletion	Chr1	14220836	14220843	7	LOC_Os01g25170
Deletion	Chr6	15890130	15890142	12
Deletion	Chr11	16646502	16646602	100
Deletion	Chr5	17461280	17461284	4
Deletion	Chr4	21150080	21150083	3
Deletion	Chr10	22472132	22472133	1	LOC_Os10g41749
Deletion	Chr6	23776945	23776946	1
Deletion	Chr7	26462092	26462145	53
Deletion	Chr1	28008094	28008095	1
Deletion	Chr8	28104266	28104268	2
Deletion	Chr3	28967739	28967742	3
Deletion	Chr2	35097712	35097715	3	LOC_Os02g57290

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr8	25824153	25824154	2
Insertion	Chr12	13157910	13157911	2
Insertion	Chr9	10327470	10327471	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	3042906	4650242	LOC_Os06g06470

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	12239980	Chr3	31080056
Translocation	Chr11	17697613	Chr5	22429736
Translocation	Chr9	17936965	Chr8	14804695
Translocation	Chr6	30977758	Chr5	9141275	2
Translocation	Chr6	30977832	Chr5	9141436	2

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