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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23628514	T-G	HET	INTERGENIC
SBS	Chr1	23628515	T-C	HET	INTERGENIC
SBS	Chr1	6310911	C-A	HOMO	INTERGENIC
SBS	Chr10	4194778	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g07578
SBS	Chr11	21537132	C-T	HET	SPLICE_SITE_ACCEPTOR	LOC_Os11g36500
SBS	Chr11	26923261	C-A	HET	INTERGENIC
SBS	Chr11	3755390	G-T	HET	INTERGENIC
SBS	Chr11	4900864	G-A	HET	INTRON
SBS	Chr12	17054721	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g28850
SBS	Chr12	24383337	G-A	HET	INTERGENIC
SBS	Chr12	26672745	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	18052814	G-A	HOMO	INTERGENIC
SBS	Chr2	18131826	T-C	HOMO	INTERGENIC
SBS	Chr2	4300366	G-T	HET	INTERGENIC
SBS	Chr2	6026691	A-T	HET	INTERGENIC
SBS	Chr3	16798794	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g29470
SBS	Chr3	28983964	G-A	HOMO	INTERGENIC
SBS	Chr4	24485955	T-G	HOMO	SYNONYMOUS_CODING
SBS	Chr4	24485956	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g41260
SBS	Chr4	25261423	T-C	HOMO	INTERGENIC
SBS	Chr5	29565669	G-C	HET	INTERGENIC
SBS	Chr5	29565671	G-A	HET	INTERGENIC
SBS	Chr6	16395830	A-T	HET	INTERGENIC
SBS	Chr6	16395831	C-T	HET	INTERGENIC
SBS	Chr7	10961442	C-T	HET	INTRON
SBS	Chr8	22811119	C-T	HOMO	INTRON
SBS	Chr9	14433956	T-C	HET	INTERGENIC
SBS	Chr9	511591	G-C	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	3980703	3980709	6
Deletion	Chr11	4356217	4356219	2
Deletion	Chr9	4918989	4918992	3
Deletion	Chr6	5320720	5320740	20
Deletion	Chr6	6312306	6312307	1
Deletion	Chr11	8755449	8755453	4	LOC_Os11g15440
Deletion	Chr6	11917508	11917521	13
Deletion	Chr10	12743302	12743304	2
Deletion	Chr12	14430332	14430349	17
Deletion	Chr4	14870001	14955000	85000	11
Deletion	Chr6	17966521	17966646	125
Deletion	Chr4	18237967	18237968	1	LOC_Os04g30520
Deletion	Chr11	18345098	18345106	8
Deletion	Chr6	20325829	20325834	5
Deletion	Chr2	20650927	20650935	8
Deletion	Chr7	20814814	20814829	15
Deletion	Chr11	23867334	23867345	11	LOC_Os11g40030
Deletion	Chr4	25261384	25261385	1
Deletion	Chr2	26704424	26704429	5
Deletion	Chr8	28439732	28439737	5
Deletion	Chr6	29696264	29696266	2
Deletion	Chr3	30119988	30119994	6	LOC_Os03g52490
Deletion	Chr4	30968723	30968726	3
Deletion	Chr3	31219329	31219340	11
Deletion	Chr3	31516131	31516144	13
Deletion	Chr1	35505062	35505074	12
Deletion	Chr1	35685200	35685201	1
Deletion	Chr1	39318075	39318082	7
Deletion	Chr1	39351342	39351356	14
Deletion	Chr1	42707646	42707670	24	LOC_Os01g73720

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	4481051	4481055	5	LOC_Os10g08290
Insertion	Chr11	19595026	19595027	2
Insertion	Chr12	26180459	26180459	1
Insertion	Chr4	28240382	28240382	1
Insertion	Chr5	22677084	22677084	1
Insertion	Chr7	1186731	1186740	10
Insertion	Chr7	27994281	27994281	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6213751	6802341	LOC_Os07g11270
Inversion	Chr1	39805476	40094695	LOC_Os01g69010
Inversion	Chr1	39805499	40094698	LOC_Os01g69010

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	18297519	Chr1	10353303
Translocation	Chr11	18298572	Chr1	10353253
Translocation	Chr11	18863187	Chr6	17966526	LOC_Os06g30901

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