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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3902480	G-A	HET	INTERGENIC
SBS	Chr1	4822767	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g09460
SBS	Chr1	9038391	A-C	HET	INTERGENIC
SBS	Chr1	17751947	T-A	HET	UTR_3_PRIME
SBS	Chr1	17876189	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	21289923	T-C	HET	INTERGENIC
SBS	Chr2	15884163	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g27020
SBS	Chr2	30820066	A-T	HOMO	INTERGENIC
SBS	Chr3	25110728	C-T	HET	INTERGENIC
SBS	Chr4	31699167	T-C	HET	INTRON
SBS	Chr5	3677878	A-T	HET	INTRON
SBS	Chr5	12094055	A-G	HET	UTR_5_PRIME
SBS	Chr5	14015578	C-A	HET	INTERGENIC
SBS	Chr5	26403412	G-A	HOMO	INTERGENIC
SBS	Chr5	27914075	G-A	HOMO	INTERGENIC
SBS	Chr6	6472265	C-T	HOMO	UTR_3_PRIME
SBS	Chr6	14631535	G-A	HOMO	INTERGENIC
SBS	Chr6	16917794	T-A	HOMO	INTERGENIC
SBS	Chr8	533615	C-T	HET	INTERGENIC
SBS	Chr8	11152039	C-T	HOMO	INTERGENIC
SBS	Chr8	20185597	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g32590
SBS	Chr8	20185598	G-C	HET	SYNONYMOUS_CODING
SBS	Chr9	22319645	G-C	HET	INTERGENIC
SBS	Chr10	93931	C-T	HET	INTERGENIC
SBS	Chr10	4313159	C-T	HOMO	INTRON
SBS	Chr10	9785387	C-T	HOMO	INTERGENIC
SBS	Chr10	14882283	T-C	HOMO	INTERGENIC
SBS	Chr12	17382333	C-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	632799	632807	8
Deletion	Chr5	1399325	1440380	41055	5
Deletion	Chr8	2677708	2677711	3
Deletion	Chr2	3754822	3754835	13	LOC_Os02g07310
Deletion	Chr7	4920645	4920646	1	LOC_Os07g09340
Deletion	Chr5	11126001	11211000	85000	12
Deletion	Chr10	12580241	12580252	11
Deletion	Chr3	13507721	13507722	1
Deletion	Chr5	13539083	13539084	1
Deletion	Chr5	13570721	13570726	5
Deletion	Chr8	13590193	13590194	1
Deletion	Chr9	14177222	14177249	27
Deletion	Chr10	14574426	14574427	1
Deletion	Chr7	15692961	15692970	9
Deletion	Chr1	20305438	20305472	34	LOC_Os01g36590
Deletion	Chr2	21061070	21061076	6	LOC_Os02g35090
Deletion	Chr2	25322307	25322315	8
Deletion	Chr2	27577627	27577640	13	LOC_Os02g45370
Deletion	Chr2	32401367	32401370	3
Deletion	Chr1	40191552	40205888	14336	4

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13733169	13733169	1
Insertion	Chr5	29017088	29017089	2
Insertion	Chr6	5344770	5344771	2
Insertion	Chr7	22054665	22054666	2
Insertion	Chr11	25244959	25244960	2
Insertion	Chr2	10236211	10236214	4
Insertion	Chr5	805954	805954	1
Insertion	Chr5	28232370	28232370	1	LOC_Os05g49200
Insertion	Chr6	23644970	23644990	21
Insertion	Chr9	19566464	19566464	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5622227	20133146	2
Inversion	Chr5	10314173	10340699	2
Inversion	Chr10	20021356	20066129	LOC_Os10g37480
Inversion	Chr6	31001026	31124693	LOC_Os06g51230

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	5622222	Chr5	24029436	2
Translocation	Chr7	21657368	Chr4	31867792	LOC_Os07g36230

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