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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7909056	T-A	HET	INTERGENIC
SBS	Chr1	28124056	G-A	HOMO	INTERGENIC
SBS	Chr1	37453487	A-G	HOMO	INTERGENIC
SBS	Chr2	1558480	A-T	HET	UTR_3_PRIME
SBS	Chr2	22575291	G-T	HET	INTERGENIC
SBS	Chr2	32234118	G-T	HET	INTRON
SBS	Chr3	889629	C-T	HET	INTERGENIC
SBS	Chr3	9856987	A-C	HOMO	INTERGENIC
SBS	Chr3	18262674	C-A	HOMO	INTERGENIC
SBS	Chr4	4701050	T-A	HOMO	INTERGENIC
SBS	Chr4	7809505	A-G	HET	INTERGENIC
SBS	Chr4	19950274	G-T	HET	INTERGENIC
SBS	Chr4	34563303	T-A	HOMO	INTERGENIC
SBS	Chr7	1256703	G-A	HET	INTERGENIC
SBS	Chr7	8449315	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g14800
SBS	Chr7	13701236	A-C	HOMO	INTERGENIC
SBS	Chr7	26869010	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g45030
SBS	Chr8	8588476	C-A	HOMO	INTERGENIC
SBS	Chr8	8754953	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g14560
SBS	Chr10	2800486	G-A	HOMO	INTERGENIC
SBS	Chr10	8550247	G-A	HET	STOP_GAINED	LOC_Os10g17070
SBS	Chr10	12206886	T-C	HET	INTERGENIC
SBS	Chr10	22254470	T-C	HET	INTERGENIC
SBS	Chr11	23364977	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g39230
SBS	Chr11	26536756	G-A	HET	INTERGENIC
SBS	Chr11	26536757	G-A	HET	INTERGENIC
SBS	Chr12	8233157	C-A	HOMO	INTERGENIC
SBS	Chr12	12753199	G-T	HOMO	INTERGENIC
SBS	Chr12	21631689	C-A	HET	INTERGENIC
SBS	Chr12	23869309	C-T	HET	INTERGENIC
SBS	Chr12	27207326	C-A	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1188001	1259000	71000	10
Deletion	Chr1	2029257	2029259	2
Deletion	Chr6	2343401	2343417	16
Deletion	Chr7	2983950	2983974	24
Deletion	Chr3	4664825	4664827	2
Deletion	Chr1	4695508	4695509	1
Deletion	Chr8	8605071	8605073	2	LOC_Os08g14350
Deletion	Chr12	8704307	8704328	21
Deletion	Chr10	11718411	11718412	1
Deletion	Chr4	13139001	13243000	104000	9
Deletion	Chr9	13816004	13816026	22
Deletion	Chr1	14890859	14890863	4
Deletion	Chr3	16919460	16919471	11
Deletion	Chr4	17096905	17096910	5
Deletion	Chr8	20095825	20095826	1
Deletion	Chr12	24223973	24223978	5
Deletion	Chr5	27770325	27770333	8
Deletion	Chr2	32124727	32124728	1
Deletion	Chr1	32492301	32492307	6
Deletion	Chr1	35123671	35123672	1
Deletion	Chr1	35777637	35777647	10

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	26359861	26359862	2
Insertion	Chr1	27134019	27134020	2	LOC_Os01g47470
Insertion	Chr1	6160503	6160506	4
Insertion	Chr8	10678210	10678211	2
Insertion	Chr10	10588332	10588337	6

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7134450	7381595
Inversion	Chr4	13138916	14183125	LOC_Os04g24700

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	8740780	Chr4	16346040	LOC_Os10g17350
Translocation	Chr9	8967616	Chr4	13251947
Translocation	Chr9	8968179	Chr4	14183133	LOC_Os04g24700
Translocation	Chr4	13243220	Chr3	24487994	LOC_Os03g43770
Translocation	Chr4	13251943	Chr3	24487970	LOC_Os03g43770
Translocation	Chr4	25163242	Chr3	20789159

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