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Mutant Information

Mutant Name	FN1217-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1217-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4518844	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g09000
SBS	Chr1	4637693	T-C	HET	INTERGENIC
SBS	Chr1	11678409	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g20900
SBS	Chr1	14302883	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	16279541	T-C	HOMO	INTERGENIC
SBS	Chr1	31053666	G-T	HET	INTERGENIC
SBS	Chr1	39092256	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g67340
SBS	Chr2	4760785	G-C	HOMO	INTERGENIC
SBS	Chr2	10489766	G-C	HET	INTERGENIC
SBS	Chr2	26291702	A-G	HOMO	INTERGENIC
SBS	Chr2	34293079	T-C	HOMO	INTERGENIC
SBS	Chr2	34675256	T-C	HOMO	INTRON
SBS	Chr3	7764911	C-T	HET	INTERGENIC
SBS	Chr3	8967717	G-A	HET	INTERGENIC
SBS	Chr4	1453812	G-A	HOMO	INTERGENIC
SBS	Chr4	14477892	A-G	HET	INTERGENIC
SBS	Chr5	314898	T-A	HOMO	INTERGENIC
SBS	Chr5	10481035	T-G	HET	INTERGENIC
SBS	Chr5	15435342	C-T	HET	INTERGENIC
SBS	Chr6	1706646	G-A	HET	INTERGENIC
SBS	Chr6	3902442	C-T	HET	INTRON
SBS	Chr7	6543619	C-G	HET	INTERGENIC
SBS	Chr7	8201247	C-T	HOMO	INTERGENIC
SBS	Chr8	3129017	T-A	HOMO	UTR_3_PRIME
SBS	Chr8	7057034	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g12020
SBS	Chr8	13095815	C-T	HET	INTERGENIC
SBS	Chr8	16705853	A-T	HET	INTERGENIC
SBS	Chr9	9490704	G-A	HET	INTRON
SBS	Chr9	9545857	A-T	HET	SYNONYMOUS_CODING
SBS	Chr10	14158806	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g26920
SBS	Chr10	14158807	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g26920
SBS	Chr11	8258990	C-G	HET	INTRON
SBS	Chr11	15828703	G-A	HET	INTERGENIC
SBS	Chr11	16466299	G-T	HET	INTERGENIC
SBS	Chr11	18849139	C-A	HET	INTRON
SBS	Chr11	18876977	A-T	HET	UTR_3_PRIME
SBS	Chr11	21421620	C-T	HOMO	INTRON
SBS	Chr11	22477490	T-C	HOMO	INTERGENIC
SBS	Chr12	1548998	C-G	HET	INTERGENIC
SBS	Chr12	13322949	C-T	HET	INTERGENIC
SBS	Chr12	17174697	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g29020
SBS	Chr12	17824523	G-A	HOMO	INTERGENIC
SBS	Chr12	21203347	C-A	HET	INTERGENIC
SBS	Chr12	21558308	G-A	HET	INTRON
SBS	Chr12	22938089	C-A	HET	INTERGENIC

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1213522	1213523	1
Deletion	Chr1	3748487	3748492	5
Deletion	Chr6	3902273	3925254	22981	4
Deletion	Chr10	4057622	4057623	1
Deletion	Chr6	5947338	5947347	9
Deletion	Chr5	6830152	6830154	2
Deletion	Chr9	9475252	9475438	186
Deletion	Chr4	9873214	9873217	3
Deletion	Chr4	11725992	11726011	19
Deletion	Chr7	11854117	11854120	3
Deletion	Chr11	15849242	15849243	1
Deletion	Chr10	16418067	16418089	22
Deletion	Chr12	17617841	17617852	11
Deletion	Chr5	17967772	17967786	14
Deletion	Chr8	18354488	18354548	60
Deletion	Chr2	18465574	18465579	5
Deletion	Chr1	18763504	18763507	3	LOC_Os01g34080
Deletion	Chr9	19231524	19231529	5
Deletion	Chr11	19625427	19625436	9
Deletion	Chr11	20007733	20007742	9
Deletion	Chr7	20955688	20955689	1
Deletion	Chr5	21254511	21254517	6
Deletion	Chr3	21801110	21801118	8
Deletion	Chr7	22026632	22026640	8
Deletion	Chr9	22311274	22311279	5
Deletion	Chr11	24225150	24225169	19
Deletion	Chr12	24263056	24263059	3
Deletion	Chr11	24675781	24681717	5936
Deletion	Chr6	27504568	27504569	1
Deletion	Chr6	27768279	27768291	12
Deletion	Chr3	29872873	29872951	78
Deletion	Chr1	31232996	31233000	4
Deletion	Chr3	31691233	31691246	13	LOC_Os03g55660
Deletion	Chr1	31720975	31720977	2
Deletion	Chr1	41112001	41165000	53000	10

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	14806864	14806865	2
Insertion	Chr3	32637274	32637274	1
Insertion	Chr8	20085411	20085412	2
Insertion	Chr8	23611468	23611469	2
Insertion	Chr8	27181136	27181136	1
Insertion	Chr11	22614828	22614829	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	3385020	11090620	2
Inversion	Chr6	3705675	11090625	LOC_Os06g19470
Inversion	Chr1	20383214	21927041	2
Inversion	Chr1	20383233	21927043	2
Inversion	Chr1	40238164	41842156	2
Inversion	Chr1	41111644	41842146	LOC_Os01g72130

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2930092	Chr6	6890642	2
Translocation	Chr12	2930677	Chr6	6890643	2
Translocation	Chr12	22729739	Chr1	24726876
Translocation	Chr11	24681710	Chr4	22088431	LOC_Os04g36620
Translocation	Chr11	24681711	Chr4	22088432	LOC_Os04g36620
Translocation	Chr12	24883650	Chr11	6038590	LOC_Os12g40200
Translocation	Chr8	25532905	Chr6	3925293	LOC_Os06g08090
Translocation	Chr8	25532924	Chr6	3902278	LOC_Os06g08060
Translocation	Chr11	25635009	Chr9	9475262	LOC_Os11g42590

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