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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14400803	T-C	HET	INTERGENIC
SBS	Chr1	29344350	G-C	HOMO	INTERGENIC
SBS	Chr1	32713049	A-T	HOMO	INTERGENIC
SBS	Chr1	33756872	T-C	HOMO	INTERGENIC
SBS	Chr10	1121200	A-C	HET	INTERGENIC
SBS	Chr10	2208840	C-T	HOMO	UTR_5_PRIME
SBS	Chr11	22525136	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g37990
SBS	Chr11	3433428	T-C	HET	UTR_3_PRIME
SBS	Chr12	10158406	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g17740
SBS	Chr12	11468824	T-G	HOMO	UTR_3_PRIME
SBS	Chr12	2638311	C-T	HOMO	UTR_3_PRIME
SBS	Chr2	1839167	C-G	HET	INTERGENIC
SBS	Chr2	19638239	T-A	HOMO	INTRON
SBS	Chr2	7301387	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g13600
SBS	Chr2	9409245	A-T	HET	UTR_5_PRIME
SBS	Chr3	33113922	G-A	HOMO	INTRON
SBS	Chr3	8617644	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	19815430	G-T	HET	INTERGENIC
SBS	Chr5	15141041	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g26040
SBS	Chr5	16332667	C-T	HET	INTERGENIC
SBS	Chr5	3217399	T-C	HOMO	INTERGENIC
SBS	Chr6	2724194	A-G	HOMO	UTR_3_PRIME
SBS	Chr6	28247875	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	6968587	G-A	HET	INTERGENIC
SBS	Chr7	4308109	G-A	HOMO	INTERGENIC
SBS	Chr7	59862	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g01110
SBS	Chr8	23667308	A-T	HOMO	INTERGENIC
SBS	Chr9	13885642	A-G	HET	INTERGENIC
SBS	Chr9	16742041	A-C	HET	INTRON

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	2721355	2721362	7	LOC_Os06g05940
Deletion	Chr11	5820387	5820388	1
Deletion	Chr8	8282355	8282356	1
Deletion	Chr2	8551952	8551954	2
Deletion	Chr12	9519595	9519634	39	LOC_Os12g16630
Deletion	Chr12	9524023	9524031	8
Deletion	Chr5	13785307	13785314	7	LOC_Os05g23950
Deletion	Chr2	13969710	13969711	1
Deletion	Chr8	14185123	14185124	1
Deletion	Chr5	15809808	15809813	5
Deletion	Chr5	16332679	16332680	1
Deletion	Chr3	16895755	16895756	1
Deletion	Chr3	17594072	17594083	11
Deletion	Chr10	20879502	20879511	9
Deletion	Chr3	22495227	22495234	7
Deletion	Chr1	22776917	22776922	5
Deletion	Chr7	23321515	23321538	23
Deletion	Chr5	23459438	23459439	1
Deletion	Chr6	24619029	24619030	1
Deletion	Chr6	24915674	24915675	1
Deletion	Chr4	24949884	24949886	2
Deletion	Chr3	26443534	26443537	3
Deletion	Chr2	26713718	26713726	8
Deletion	Chr6	27155836	27155837	1	LOC_Os06g44920
Deletion	Chr6	27884986	27887072	2086
Deletion	Chr4	31929834	31929840	6
Deletion	Chr2	32194385	32194388	3
Deletion	Chr4	33473343	33473387	44

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	9490478	9490479	2
Insertion	Chr3	29048654	29048654	1
Insertion	Chr5	311092	311093	2	LOC_Os05g01520

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	29291276	29337429	LOC_Os07g48950
Inversion	Chr7	29311646	29337432

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	2219170	Chr2	20384035	LOC_Os03g04670
Translocation	Chr3	2219175	Chr2	20388621	LOC_Os03g04670
Translocation	Chr10	11026467	Chr7	29311695
Translocation	Chr10	11027142	Chr8	27565051	2
Translocation	Chr8	27565046	Chr7	29309843	LOC_Os08g43570
Translocation	Chr7	29291291	Chr6	27887120	LOC_Os07g48950
Translocation	Chr7	29309861	Chr6	27884986

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