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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37227176	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g64080
SBS	Chr1	40561698	G-A	HOMO	INTERGENIC
SBS	Chr10	131393	G-A	HOMO	INTERGENIC
SBS	Chr10	20065402	C-A	HOMO	INTRON
SBS	Chr10	20065403	T-C	HOMO	INTRON
SBS	Chr10	22355828	T-A	HOMO	INTERGENIC
SBS	Chr11	27995972	A-G	HOMO	INTRON
SBS	Chr12	5370618	T-A	HOMO	INTERGENIC
SBS	Chr2	12658075	G-C	HET	INTERGENIC
SBS	Chr2	17607508	G-A	HET	INTERGENIC
SBS	Chr2	2255879	G-A	HOMO	INTRON
SBS	Chr2	28988826	C-T	HOMO	INTERGENIC
SBS	Chr3	10839269	C-A	HOMO	INTERGENIC
SBS	Chr3	28186084	C-T	HOMO	UTR_3_PRIME
SBS	Chr4	20231133	C-A	HOMO	INTERGENIC
SBS	Chr4	22433969	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g37720
SBS	Chr4	27174440	A-T	HOMO	INTERGENIC
SBS	Chr4	9457831	T-C	HOMO	INTERGENIC
SBS	Chr5	18782297	G-A	HET	STOP_GAINED	LOC_Os05g32210
SBS	Chr5	24458249	C-A	HOMO	INTERGENIC
SBS	Chr5	24632436	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	3539015	T-A	HET	INTERGENIC
SBS	Chr5	6256628	T-C	HET	INTRON
SBS	Chr7	16778792	G-T	HET	INTERGENIC
SBS	Chr7	17348236	T-G	HET	INTERGENIC
SBS	Chr7	18881206	C-T	HET	INTERGENIC
SBS	Chr7	25640384	A-G	HET	INTERGENIC
SBS	Chr7	26760017	G-A	HET	INTERGENIC
SBS	Chr7	5306409	C-T	HET	INTERGENIC
SBS	Chr8	12409360	T-G	HET	INTERGENIC
SBS	Chr8	3259564	T-C	HET	INTERGENIC
SBS	Chr9	1844948	A-G	HOMO	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	3682419	3682440	21
Deletion	Chr7	8067457	8067463	6
Deletion	Chr5	10800387	10800400	13
Deletion	Chr12	11092824	11092825	1
Deletion	Chr7	13213287	13213288	1
Deletion	Chr5	15945827	15945833	6
Deletion	Chr8	18323390	18323391	1
Deletion	Chr11	21970583	21970593	10
Deletion	Chr1	22595643	22595644	1
Deletion	Chr12	23557241	23557252	11
Deletion	Chr3	23837635	23837639	4
Deletion	Chr8	25835104	25835105	1
Deletion	Chr3	28500187	28500220	33	LOC_Os03g49980
Deletion	Chr2	29530551	29530554	3
Deletion	Chr5	29715682	29715688	6
Deletion	Chr1	33700741	33700742	1
Deletion	Chr3	35975327	35975328	1	LOC_Os03g63710

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr9	5009001	5009004	4

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	23840018	24383376	LOC_Os07g39780
Inversion	Chr7	23840960	24383332	LOC_Os07g39790

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	5767834	Chr1	37472141	LOC_Os12g10740
Translocation	Chr12	5767847	Chr1	37486670	LOC_Os12g10740
Translocation	Chr5	5818655	Chr2	30879368	LOC_Os02g50560
Translocation	Chr5	5818676	Chr2	30871313
Translocation	Chr7	23839998	Chr1	37486911	LOC_Os07g39780
Translocation	Chr7	24383324	Chr1	37486628

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