Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	11652470	C-T	HOMO	INTRON
SBS	Chr10	15912613	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr10	21684987	T-C	HOMO	INTERGENIC
SBS	Chr11	27740626	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g45850
SBS	Chr12	23544543	C-A	HOMO	INTERGENIC
SBS	Chr12	23924389	A-T	HET	INTERGENIC
SBS	Chr12	9365117	T-A	HOMO	UTR_3_PRIME
SBS	Chr2	21360200	G-A	HOMO	INTERGENIC
SBS	Chr3	14430851	C-A	HET	INTERGENIC
SBS	Chr3	30470498	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g53130
SBS	Chr4	14155898	G-A	HOMO	INTERGENIC
SBS	Chr4	25311541	T-A	HET	INTERGENIC
SBS	Chr4	25311542	T-A	HET	INTERGENIC
SBS	Chr4	34266962	G-A	HOMO	INTERGENIC
SBS	Chr4	34338172	G-A	HET	INTERGENIC
SBS	Chr4	34948334	A-T	HET	INTRON
SBS	Chr4	6946764	C-T	HET	INTERGENIC
SBS	Chr4	9081809	G-C	HOMO	INTRON
SBS	Chr5	4082372	C-T	HET	INTERGENIC
SBS	Chr6	23043613	C-T	HET	INTERGENIC
SBS	Chr6	23043614	G-T	HET	INTERGENIC
SBS	Chr6	4031737	G-A	HOMO	INTERGENIC
SBS	Chr7	15804851	G-A	HET	INTRON
SBS	Chr7	28365873	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g47440
SBS	Chr8	15539072	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	15708588	G-A	HOMO	INTERGENIC
SBS	Chr8	5207781	T-G	HET	INTERGENIC
SBS	Chr8	7494630	T-C	HOMO	INTRON
SBS	Chr9	284174	G-T	HOMO	INTERGENIC
SBS	Chr9	3171710	A-C	HOMO	INTRON

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1543717	1543718	1
Deletion	Chr12	2873445	2873449	4
Deletion	Chr5	5983125	5983129	4
Deletion	Chr9	7433112	7433115	3
Deletion	Chr9	8119108	8119112	4	LOC_Os09g13820
Deletion	Chr7	9096514	9096516	2
Deletion	Chr11	10244487	10244491	4
Deletion	Chr4	11570859	11570868	9
Deletion	Chr1	16872599	16872600	1	LOC_Os01g30936
Deletion	Chr3	19483566	19483567	1
Deletion	Chr3	19699247	19699254	7
Deletion	Chr2	25221537	25221539	2
Deletion	Chr8	26418143	26418145	2
Deletion	Chr1	27592809	27592814	5	LOC_Os01g48180
Deletion	Chr4	32227320	32227323	3
Deletion	Chr4	32601792	32601793	1	LOC_Os04g54820
Deletion	Chr4	33441599	33441632	33
Deletion	Chr1	38633266	38633296	30	LOC_Os01g66520

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	11319620	11319620	1
Insertion	Chr7	9470702	9470702	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	10900075	27088157
Inversion	Chr4	29153681	34965521	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	24105536	Chr4	24348147	2

Main menu