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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17707742	C-T	HOMO	INTERGENIC
SBS	Chr1	24008688	T-C	HET	INTERGENIC
SBS	Chr1	24274675	C-A	HET	INTERGENIC
SBS	Chr1	24274677	C-A	HET	INTERGENIC
SBS	Chr1	24274682	C-T	HET	INTERGENIC
SBS	Chr1	7116169	A-T	HOMO	INTRON
SBS	Chr10	14137163	G-A	HOMO	INTERGENIC
SBS	Chr10	192464	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g01300
SBS	Chr11	3584676	G-A	HET	INTERGENIC
SBS	Chr12	21612120	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g35540
SBS	Chr12	22929920	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g37340
SBS	Chr12	8290436	G-A	HET	INTERGENIC
SBS	Chr2	26133989	A-G	HOMO	INTERGENIC
SBS	Chr2	5039916	C-T	HOMO	INTRON
SBS	Chr3	2759424	A-C	HET	INTRON
SBS	Chr3	2873936	T-G	HOMO	INTRON
SBS	Chr3	35791502	G-T	HET	INTRON
SBS	Chr4	26134272	G-A	HET	START_GAINED	LOC_Os04g44150
SBS	Chr4	7489504	C-G	HOMO	INTERGENIC
SBS	Chr5	21075115	C-A	HET	INTERGENIC
SBS	Chr5	23159277	G-T	HET	INTERGENIC
SBS	Chr5	28795040	A-G	HET	INTERGENIC
SBS	Chr5	477531	C-T	HOMO	INTERGENIC
SBS	Chr5	7091693	G-T	HET	INTRON
SBS	Chr6	10602735	G-A	HET	INTERGENIC
SBS	Chr6	20480431	A-C	HET	INTERGENIC
SBS	Chr7	25514018	A-T	HOMO	INTERGENIC
SBS	Chr7	737847	A-G	HET	INTRON
SBS	Chr7	8154077	G-T	HET	INTERGENIC
SBS	Chr9	18463189	A-G	HOMO	INTERGENIC
SBS	Chr9	2712917	T-G	HET	INTERGENIC
SBS	Chr9	8689628	C-T	HET	INTERGENIC
SBS	Chr9	8689629	G-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	994222	994230	8
Deletion	Chr12	1075210	1075219	9	LOC_Os12g02910
Deletion	Chr8	3411872	3411876	4
Deletion	Chr9	5389928	5389929	1
Deletion	Chr4	7371559	7371560	1	LOC_Os04g13290
Deletion	Chr12	7421772	7421773	1
Deletion	Chr1	7508275	7508276	1
Deletion	Chr12	13991746	13991748	2	LOC_Os12g24510
Deletion	Chr7	16229695	16229698	3
Deletion	Chr8	19141774	19141784	10
Deletion	Chr5	19627434	19627447	13
Deletion	Chr8	21061055	21061060	5
Deletion	Chr10	22151296	22151301	5
Deletion	Chr5	23217713	23217714	1
Deletion	Chr6	24177563	24177565	2
Deletion	Chr1	24652235	24652236	1
Deletion	Chr11	26963584	26963585	1
Deletion	Chr6	30432001	30530000	98000	17
Deletion	Chr3	33657943	33657944	1
Deletion	Chr1	38372119	38372143	24

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	7861130	7861130	1
Insertion	Chr10	9413777	9413778	2	LOC_Os10g18560
Insertion	Chr11	4357002	4357003	2
Insertion	Chr12	4576485	4576485	1
Insertion	Chr2	16516655	16516656	2

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	5149211	Chr1	1991889
Translocation	Chr9	20883363	Chr4	17888294	LOC_Os04g29990

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