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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	2833367	G-A	HET	INTERGENIC
SBS	Chr11	22344923	C-T	HOMO	INTERGENIC
SBS	Chr11	4661040	G-A	HET	INTRON
SBS	Chr11	8307460	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr12	11213577	A-C	HET	INTERGENIC
SBS	Chr12	24562825	G-T	HET	INTERGENIC
SBS	Chr12	3178830	T-G	HET	INTERGENIC
SBS	Chr2	10657964	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	15614316	A-G	HET	INTERGENIC
SBS	Chr2	18630266	G-A	HET	INTERGENIC
SBS	Chr2	18831211	A-C	HET	INTRON
SBS	Chr2	19517941	C-T	HET	INTERGENIC
SBS	Chr2	20894544	G-A	HET	INTERGENIC
SBS	Chr2	27743059	A-G	HOMO	INTERGENIC
SBS	Chr3	23762089	T-C	HET	INTERGENIC
SBS	Chr4	16075082	C-A	HET	INTERGENIC
SBS	Chr4	2150088	A-T	HET	INTERGENIC
SBS	Chr4	2900462	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05670
SBS	Chr4	3398560	G-T	HOMO	INTERGENIC
SBS	Chr4	5707434	G-A	HET	INTERGENIC
SBS	Chr5	17393812	C-T	HET	INTERGENIC
SBS	Chr5	19861246	T-C	HET	INTERGENIC
SBS	Chr5	5948143	G-C	HOMO	INTERGENIC
SBS	Chr6	13976482	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	13976483	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g23920
SBS	Chr6	16155059	G-T	HOMO	INTRON
SBS	Chr6	20121910	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g34600
SBS	Chr6	30245568	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g49950
SBS	Chr6	5215382	T-A	HET	INTERGENIC
SBS	Chr7	10475650	G-T	HOMO	INTERGENIC
SBS	Chr7	16812434	A-G	HOMO	INTERGENIC
SBS	Chr7	26760017	G-A	HOMO	INTERGENIC
SBS	Chr8	1618445	A-T	HOMO	INTERGENIC
SBS	Chr9	1060712	G-T	HET	INTERGENIC
SBS	Chr9	2005047	T-C	HET	INTERGENIC
SBS	Chr9	7306124	G-A	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	126346	135892	9546	2
Deletion	Chr2	1149134	1149137	3	LOC_Os02g02930
Deletion	Chr10	1385516	1385518	2	LOC_Os10g03270
Deletion	Chr12	1509324	1509332	8
Deletion	Chr8	1709754	1709765	11
Deletion	Chr10	1952001	1965000	13000	2
Deletion	Chr5	3211630	3211634	4
Deletion	Chr6	3345667	3345668	1
Deletion	Chr2	5287242	5287244	2
Deletion	Chr10	5503738	5503740	2
Deletion	Chr12	5751543	5751545	2
Deletion	Chr12	6752001	6873000	121000	18
Deletion	Chr12	6875001	7099000	224000	37
Deletion	Chr3	6922736	6922739	3
Deletion	Chr2	7884171	7884178	7	LOC_Os02g14370
Deletion	Chr3	8079604	8079622	18
Deletion	Chr3	8120088	8120096	8
Deletion	Chr3	11796670	11796696	26
Deletion	Chr10	12321727	12321733	6	LOC_Os10g24050
Deletion	Chr3	14811415	14811424	9
Deletion	Chr7	18517139	18517140	1
Deletion	Chr2	18629967	18629972	5
Deletion	Chr7	21421119	21421125	6
Deletion	Chr7	24198201	24198202	1
Deletion	Chr6	27411297	27411369	72
Deletion	Chr6	28015923	28015926	3
Deletion	Chr2	31687841	31687852	11	LOC_Os02g51730

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	13939435	13939440	6	LOC_Os10g26690
Insertion	Chr10	9413777	9413778	2	LOC_Os10g18560
Insertion	Chr2	11595555	11595558	4
Insertion	Chr5	21765747	21765750	4

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1952093	2228204	2
Inversion	Chr8	6443611	20240543	LOC_Os08g10930
Inversion	Chr12	6751686	8121293
Inversion	Chr12	7099108	8121305	LOC_Os12g12850

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1965658	Chr1	21680627
Translocation	Chr10	2228237	Chr1	21681043	LOC_Os10g04674
Translocation	Chr9	11597067	Chr6	10213537	LOC_Os06g17600
Translocation	Chr11	15462243	Chr8	20240547	LOC_Os11g26910

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