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Mutant Information

Mutant Name	FN1261-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1261-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1538288	A-G	HET	INTRON
SBS	Chr1	3885172	C-A	HET	INTRON
SBS	Chr1	8904628	T-A	HET	INTRON
SBS	Chr1	36191022	G-A	HET	INTRON
SBS	Chr1	41061511	T-A	HET	INTRON
SBS	Chr1	41296455	A-G	HET	INTERGENIC
SBS	Chr2	1610250	G-C	HOMO	INTERGENIC
SBS	Chr2	4653122	T-C	HET	INTRON
SBS	Chr2	6193169	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g11940
SBS	Chr2	22530841	A-T	HET	INTRON
SBS	Chr2	30855630	C-A	HET	INTRON
SBS	Chr2	31715232	G-C	HET	INTRON
SBS	Chr3	2781068	C-G	HET	INTERGENIC
SBS	Chr3	20658890	C-A	HET	INTRON
SBS	Chr3	22661775	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g40725
SBS	Chr3	30966192	G-A	HOMO	INTERGENIC
SBS	Chr4	3195184	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g06144
SBS	Chr4	10403710	A-T	HET	STOP_GAINED	LOC_Os04g18750
SBS	Chr4	15173632	C-T	HET	INTERGENIC
SBS	Chr4	16508751	T-A	HET	INTRON
SBS	Chr5	8143238	G-A	HET	INTERGENIC
SBS	Chr5	17151113	T-G	HET	INTRON
SBS	Chr5	19849209	T-C	HET	INTERGENIC
SBS	Chr6	1211523	C-T	HET	INTERGENIC
SBS	Chr6	1211524	C-T	HET	INTERGENIC
SBS	Chr6	24414300	T-G	HET	INTERGENIC
SBS	Chr6	27043005	A-C	HET	INTERGENIC
SBS	Chr7	8406867	A-G	HOMO	UTR_3_PRIME
SBS	Chr7	29094803	A-T	HET	INTERGENIC
SBS	Chr8	10240669	C-T	HOMO	INTERGENIC
SBS	Chr8	12915411	C-T	HOMO	INTERGENIC
SBS	Chr8	15234595	G-T	HET	INTRON
SBS	Chr9	7952103	C-A	HET	INTERGENIC
SBS	Chr9	18281165	A-T	HOMO	INTERGENIC
SBS	Chr10	18131047	C-T	HET	INTERGENIC
SBS	Chr10	18527194	A-T	HET	INTERGENIC
SBS	Chr10	18527195	A-T	HET	INTERGENIC
SBS	Chr10	20987806	G-A	HOMO	INTERGENIC
SBS	Chr11	15828082	C-T	HET	INTERGENIC
SBS	Chr11	17155589	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	21799767	G-A	HET	INTERGENIC
SBS	Chr12	489982	C-T	HET	INTERGENIC
SBS	Chr12	4885754	C-A	HOMO	INTERGENIC
SBS	Chr12	17456787	G-A	HET	STOP_GAINED	LOC_Os12g29380
SBS	Chr12	20774915	T-A	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	244074	244076	2
Deletion	Chr11	1027558	1027559	1
Deletion	Chr12	1908649	1908659	10	LOC_Os12g04480
Deletion	Chr4	1979199	1979202	3
Deletion	Chr12	2791667	2791670	3
Deletion	Chr9	3085790	3085798	8	LOC_Os09g06499
Deletion	Chr11	4476840	4476847	7	LOC_Os11g08470
Deletion	Chr6	6453041	6453067	26	LOC_Os06g12040
Deletion	Chr12	6621437	6621449	12
Deletion	Chr1	6701539	6701547	8
Deletion	Chr9	7446852	7446853	1
Deletion	Chr7	8389415	8389422	7
Deletion	Chr2	8596779	8596783	4
Deletion	Chr10	9995669	9995677	8
Deletion	Chr4	12879734	12879735	1
Deletion	Chr5	14708092	14708093	1
Deletion	Chr4	17203846	17203847	1
Deletion	Chr4	19178170	19178178	8
Deletion	Chr3	19522758	19522761	3
Deletion	Chr2	22016186	22016195	9	LOC_Os02g36450
Deletion	Chr1	22348744	22348747	3
Deletion	Chr3	22482419	22482422	3
Deletion	Chr9	22760704	22760714	10
Deletion	Chr8	23178338	23178349	11
Deletion	Chr5	23573817	23573820	3
Deletion	Chr4	25933442	25933447	5
Deletion	Chr5	28265249	28265252	3	LOC_Os05g49270
Deletion	Chr3	31571064	31571066	2
Deletion	Chr1	32340874	32340876	2
Deletion	Chr1	35940545	35940565	20	LOC_Os01g62100

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	39185137	39185138	2
Insertion	Chr2	1586979	1586980	2
Insertion	Chr3	15780243	15780244	2
Insertion	Chr7	19027147	19027148	2
Insertion	Chr5	27309606	27309609	4
Insertion	Chr8	16701441	16701442	2
Insertion	Chr8	24124414	24124415	2
Insertion	Chr3	20642941	20642941	1	LOC_Os03g37250
Insertion	Chr6	11498487	11498487	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	4421548	4441635

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	11769923	Chr1	17461040	LOC_Os01g31870
Translocation	Chr10	15363089	Chr4	16367931	LOC_Os10g29560
Translocation	Chr4	16367967	Chr1	14014981	LOC_Os01g24880
Translocation	Chr8	24205377	Chr5	21556279	2
Translocation	Chr8	24253461	Chr5	21556263	2

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