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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12513187	G-A	HET	INTRON
SBS	Chr1	12705443	C-T	HET	STOP_GAINED	LOC_Os01g22600
SBS	Chr1	12705446	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g22600
SBS	Chr1	21428496	C-G	HOMO	INTRON
SBS	Chr1	23486725	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g41490
SBS	Chr1	23510580	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g41530
SBS	Chr1	24656549	G-A	HOMO	INTERGENIC
SBS	Chr1	35725006	C-A	HET	INTRON
SBS	Chr1	8550017	A-T	HOMO	INTERGENIC
SBS	Chr10	10714027	T-C	HOMO	INTRON
SBS	Chr11	251587	C-T	HET	STOP_GAINED	LOC_Os11g01410
SBS	Chr11	9932550	A-T	HOMO	INTERGENIC
SBS	Chr12	14313511	T-A	HOMO	INTRON
SBS	Chr12	14519964	G-C	HET	INTRON
SBS	Chr12	1834684	C-T	HOMO	INTERGENIC
SBS	Chr2	29456864	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g48110
SBS	Chr2	29560367	G-A	HET	INTERGENIC
SBS	Chr3	15999807	G-A	HET	STOP_GAINED	LOC_Os03g27850
SBS	Chr3	33141109	C-A	HET	UTR_5_PRIME
SBS	Chr3	7374020	G-A	HOMO	INTERGENIC
SBS	Chr4	17323104	G-C	HET	INTERGENIC
SBS	Chr4	19765440	C-T	HET	INTERGENIC
SBS	Chr4	2372976	G-A	HET	INTERGENIC
SBS	Chr4	24724607	G-A	HET	INTERGENIC
SBS	Chr5	29613226	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	8455549	C-T	HET	INTERGENIC
SBS	Chr6	17842721	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g30760
SBS	Chr6	17842722	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	21091914	T-C	HOMO	INTERGENIC
SBS	Chr6	6031996	G-T	HET	INTERGENIC
SBS	Chr6	7797539	G-C	HET	INTERGENIC
SBS	Chr8	11939168	C-T	HET	INTERGENIC
SBS	Chr8	24043735	T-C	HET	INTERGENIC
SBS	Chr8	25773116	T-G	HET	INTERGENIC
SBS	Chr8	27864362	A-T	HET	INTRON
SBS	Chr8	7762677	G-A	HET	INTERGENIC
SBS	Chr9	13290748	G-A	HET	INTERGENIC
SBS	Chr9	20687753	A-T	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	3568978	3568979	1
Deletion	Chr12	4053818	4053827	9
Deletion	Chr3	6568923	6568927	4
Deletion	Chr3	9780748	9780780	32
Deletion	Chr6	10771182	10777510	6328	LOC_Os06g18950
Deletion	Chr9	11402324	11402334	10
Deletion	Chr3	14047849	14047861	12
Deletion	Chr6	14755393	14755405	12
Deletion	Chr3	16064837	16064839	2	LOC_Os03g27960
Deletion	Chr7	18362807	18362809	2
Deletion	Chr1	18909171	18909177	6
Deletion	Chr2	19810593	19810601	8	LOC_Os02g33340
Deletion	Chr1	21266164	21266182	18	LOC_Os01g37960
Deletion	Chr5	22255775	22255776	1
Deletion	Chr4	22375135	22375136	1
Deletion	Chr1	22629754	22629773	19
Deletion	Chr8	22723214	22723225	11
Deletion	Chr3	23920001	23962000	42000	7
Deletion	Chr3	28935341	28935348	7	LOC_Os03g50670
Deletion	Chr2	31698286	31698404	118	LOC_Os02g51750
Deletion	Chr3	33577469	33577488	19
Deletion	Chr2	35197756	35197770	14

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	25761349	25761349	1
Insertion	Chr2	10135304	10135307	4	LOC_Os02g17620
Insertion	Chr3	23671316	23671319	4
Insertion	Chr6	25246934	25246935	2
Insertion	Chr7	3165265	3165266	2
Insertion	Chr9	16276374	16276374	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	19259222	20004899	LOC_Os06g33080
Inversion	Chr6	19272359	20004896	LOC_Os06g33100
Inversion	Chr6	19272370	20004899	LOC_Os06g33100

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3746094	Chr1	12697758
Translocation	Chr11	3746096	Chr1	12697553
Translocation	Chr6	5136746	Chr2	30794803	LOC_Os02g50440
Translocation	Chr12	12207510	Chr6	9724859	2
Translocation	Chr12	12210644	Chr6	9724843	LOC_Os06g16790
Translocation	Chr12	20981305	Chr6	23038900

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