Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11227977	C-A	HOMO	INTERGENIC
SBS	Chr1	15873160	G-A	HOMO	INTERGENIC
SBS	Chr1	16860325	G-C	HET	INTERGENIC
SBS	Chr1	16860480	T-G	HET	INTERGENIC
SBS	Chr1	17727329	T-C	HOMO	INTERGENIC
SBS	Chr10	20215310	G-A	HET	INTERGENIC
SBS	Chr10	4574637	A-T	HOMO	INTRON
SBS	Chr11	11679980	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g20220
SBS	Chr11	11811713	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g20400
SBS	Chr11	16034828	C-T	HOMO	INTERGENIC
SBS	Chr11	16680939	C-T	HOMO	INTRON
SBS	Chr11	23742277	A-T	HET	INTERGENIC
SBS	Chr11	23742278	G-T	HET	INTERGENIC
SBS	Chr11	28878790	A-C	HET	INTERGENIC
SBS	Chr11	6159091	C-T	HET	INTERGENIC
SBS	Chr12	2302478	C-T	HET	INTERGENIC
SBS	Chr12	26628226	G-A	HET	INTERGENIC
SBS	Chr2	12139425	C-A	HOMO	INTERGENIC
SBS	Chr2	1416212	A-T	HET	INTERGENIC
SBS	Chr2	30611626	C-T	HET	INTERGENIC
SBS	Chr2	7037951	G-T	HOMO	INTERGENIC
SBS	Chr3	28148469	A-T	HET	INTERGENIC
SBS	Chr3	34044115	T-C	HOMO	INTRON
SBS	Chr4	10897137	C-T	HET	INTERGENIC
SBS	Chr4	35165654	C-T	HET	INTERGENIC
SBS	Chr5	26904105	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	28862907	T-A	HET	INTERGENIC
SBS	Chr5	29473392	T-A	HET	INTRON
SBS	Chr6	1259826	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	29717888	G-A	HOMO	INTERGENIC
SBS	Chr7	13331404	A-T	HOMO	INTERGENIC
SBS	Chr7	13331405	G-A	HOMO	INTERGENIC
SBS	Chr7	5877771	T-C	HOMO	INTRON
SBS	Chr8	10572877	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g17294
SBS	Chr8	10572878	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g17294
SBS	Chr8	13416753	C-T	HET	INTERGENIC
SBS	Chr8	16029746	G-T	HET	INTERGENIC
SBS	Chr8	16029748	G-T	HET	INTERGENIC
SBS	Chr8	20082779	G-A	HET	INTERGENIC
SBS	Chr9	9350135	G-A	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	448060	448068	8
Deletion	Chr10	773401	773405	4
Deletion	Chr6	2624204	2624205	1
Deletion	Chr11	2915583	2915589	6
Deletion	Chr2	3174515	3174519	4
Deletion	Chr2	4742892	4742893	1	LOC_Os02g09220
Deletion	Chr4	10887874	10887876	2
Deletion	Chr8	11060906	11060907	1	LOC_Os08g18044
Deletion	Chr10	13227481	13227491	10
Deletion	Chr5	14874259	14874260	1
Deletion	Chr12	15014898	15014902	4
Deletion	Chr4	16018442	16018448	6
Deletion	Chr4	16300169	16306188	6019	LOC_Os04g27550
Deletion	Chr11	19315697	19315703	6
Deletion	Chr8	20829488	20829492	4
Deletion	Chr10	21841362	21841656	294
Deletion	Chr5	22209900	22209906	6
Deletion	Chr9	22455036	22455048	12
Deletion	Chr10	22647953	22647958	5
Deletion	Chr9	22879024	22879036	12
Deletion	Chr5	22889017	22889019	2
Deletion	Chr3	23209265	23209266	1
Deletion	Chr8	27820285	27820287	2
Deletion	Chr1	28539420	28539421	1	LOC_Os01g49650
Deletion	Chr4	31489970	31490028	58
Deletion	Chr1	36522376	36522378	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	10308547	10308550	4
Insertion	Chr6	5048099	5048100	2
Insertion	Chr7	29661649	29661650	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	170133	352900	2
Inversion	Chr9	16100825	16288196	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	9228980	Chr4	7080219
Translocation	Chr10	21841637	Chr3	3457171

Main menu