Search Results
| Mutant Information |
|---|
| Mutant Name | FN1281-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1281-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 5428087 | C-T | HET | INTRON | |
| SBS | Chr1 | 16834142 | C-T | HET | INTRON | |
| SBS | Chr1 | 35284144 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr2 | 30370446 | C-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 30738604 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr2 | 35075238 | A-T | HOMO | INTRON | |
| SBS | Chr2 | 35075240 | A-G | HOMO | INTRON | |
| SBS | Chr3 | 12409120 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 17243074 | C-G | HET | INTERGENIC | |
| SBS | Chr3 | 17392771 | C-G | HET | INTERGENIC | |
| SBS | Chr3 | 18447262 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 32065635 | A-T | HET | INTRON | |
| SBS | Chr3 | 35549907 | A-G | HET | INTRON | |
| SBS | Chr5 | 10539452 | A-G | HET | INTRON | |
| SBS | Chr5 | 12945862 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g22810 |
| SBS | Chr5 | 25184426 | G-A | HET | INTRON | |
| SBS | Chr6 | 1266472 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g03320 |
| SBS | Chr6 | 3375012 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 19799323 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 28560366 | G-A | HET | INTRON | |
| SBS | Chr6 | 29439212 | T-G | HET | INTRON | |
| SBS | Chr8 | 27804429 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g44170 |
| SBS | Chr10 | 21779986 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 10511796 | T-G | HET | INTERGENIC | |
| SBS | Chr12 | 5679991 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 7601376 | T-A | HET | INTERGENIC | |
| SBS | Chr12 | 14778988 | T-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 22272343 | T-G | HOMO | STOP_GAINED | LOC_Os12g36380 |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 4287328 | 4287334 | 6 | |
| Deletion | Chr8 | 5946064 | 5946072 | 8 | |
| Deletion | Chr9 | 6244516 | 6244520 | 4 | |
| Deletion | Chr6 | 7304442 | 7304452 | 10 | |
| Deletion | Chr6 | 8086579 | 8086632 | 53 | |
| Deletion | Chr11 | 9759067 | 9759068 | 1 | LOC_Os11g17504 |
| Deletion | Chr8 | 12047517 | 12047518 | 1 | |
| Deletion | Chr5 | 13010314 | 13010339 | 25 | |
| Deletion | Chr12 | 13979440 | 13979461 | 21 | |
| Deletion | Chr1 | 16150001 | 16232000 | 82000 | 13 |
| Deletion | Chr8 | 20544662 | 20544668 | 6 | LOC_Os08g33070 |
| Deletion | Chr3 | 23892379 | 23892380 | 1 | |
| Deletion | Chr8 | 26068001 | 26460000 | 392000 | 61 |
| Deletion | Chr7 | 27306011 | 27306016 | 5 | |
| Deletion | Chr8 | 27796529 | 27796542 | 13 | LOC_Os08g44150 |
| Deletion | Chr3 | 31641389 | 31641395 | 6 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 8412118 | 8412119 | 2 | |
| Insertion | Chr2 | 16468454 | 16468457 | 4 | LOC_Os02g27810 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 14603684 | 14729588 | |
| Inversion | Chr9 | 14603695 | 14729588 | |
| Inversion | Chr12 | 17513304 | 17976266 | |
| Inversion | Chr7 | 19372580 | 19379171 | LOC_Os07g32530 |
| Inversion | Chr7 | 19372597 | 19379171 | LOC_Os07g32530 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 4132594 | Chr1 | 6087878 | |
| Translocation | Chr8 | 14511148 | Chr2 | 17305009 | |
| Translocation | Chr4 | 16367935 | Chr3 | 25947801 | |
| Translocation | Chr11 | 23187875 | Chr8 | 7795947 |