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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2143241	G-A	HET	INTERGENIC
SBS	Chr1	3959331	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g08170
SBS	Chr1	6865631	T-A	HOMO	INTERGENIC
SBS	Chr1	10600332	T-A	HOMO	INTERGENIC
SBS	Chr1	10600337	A-T	HOMO	INTERGENIC
SBS	Chr1	13950226	C-T	HOMO	INTERGENIC
SBS	Chr1	16200712	G-A	HET	INTERGENIC
SBS	Chr1	36817312	A-C	HET	INTERGENIC
SBS	Chr1	36817313	T-A	HET	INTERGENIC
SBS	Chr1	42439235	G-A	HOMO	INTERGENIC
SBS	Chr1	42638365	C-G	HOMO	INTERGENIC
SBS	Chr1	42638368	A-T	HOMO	INTERGENIC
SBS	Chr2	14442483	C-T	HET	INTERGENIC
SBS	Chr3	3032084	T-A	HET	INTERGENIC
SBS	Chr3	26484048	T-G	HOMO	INTERGENIC
SBS	Chr3	32829390	T-G	HET	UTR_3_PRIME
SBS	Chr4	12407990	C-T	HET	INTERGENIC
SBS	Chr4	19901582	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g32940
SBS	Chr5	1589108	G-A	HET	INTERGENIC
SBS	Chr5	22922578	C-T	HET	INTRON
SBS	Chr6	28897301	C-A	HET	INTERGENIC
SBS	Chr6	28897303	C-A	HET	INTERGENIC
SBS	Chr7	18838113	A-T	HET	INTERGENIC
SBS	Chr7	19821138	G-T	HET	INTERGENIC
SBS	Chr8	11880069	C-T	HET	INTERGENIC
SBS	Chr8	22565528	G-A	HET	INTERGENIC
SBS	Chr9	21398825	A-G	HET	INTERGENIC
SBS	Chr10	5238995	C-A	HOMO	INTERGENIC
SBS	Chr10	10733040	T-C	HET	INTERGENIC
SBS	Chr10	15320279	T-A	HOMO	INTERGENIC
SBS	Chr11	7360924	T-C	HET	INTERGENIC
SBS	Chr11	18373054	C-A	HET	UTR_3_PRIME
SBS	Chr11	26968419	C-G	HET	INTRON
SBS	Chr12	15135968	T-A	HOMO	INTRON
SBS	Chr12	22306171	G-A	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1665925	1665940	15
Deletion	Chr5	2073559	2073560	1
Deletion	Chr5	5415372	5415380	8
Deletion	Chr10	8100250	8100259	9
Deletion	Chr12	8657383	8657391	8
Deletion	Chr4	10564983	10564986	3
Deletion	Chr11	11094595	11094599	4
Deletion	Chr10	12192730	12192733	3
Deletion	Chr6	20688817	20688828	11
Deletion	Chr11	21960001	21970000	10000	LOC_Os11g37190
Deletion	Chr1	22425394	22425395	1
Deletion	Chr6	22669740	22669748	8
Deletion	Chr5	23572090	23572091	1	LOC_Os05g40120
Deletion	Chr11	25775877	25775878	1	LOC_Os11g42800
Deletion	Chr3	32201293	32201296	3
Deletion	Chr1	39554715	39554865	150	LOC_Os01g68040
Deletion	Chr1	43208202	43208210	8

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	28548899	28548900	2
Insertion	Chr7	3643477	3643479	3
Insertion	Chr9	16220472	16220474	3
Insertion	Chr10	2478261	2478262	2
Insertion	Chr3	6847944	6847944	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	10073978	12284909
Inversion	Chr1	37679714	39392981	LOC_Os01g64900
Inversion	Chr1	38301291	38331472	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	14804557	Chr1	6282571	LOC_Os01g11650
Translocation	Chr11	21961152	Chr1	38331465	LOC_Os01g66050
Translocation	Chr11	21969924	Chr1	38331048	LOC_Os01g66050

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr1	38214628	38214628	0	LOC_Os01g65800

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