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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3403977	A-C	HET	INTRON
SBS	Chr1	13764401	C-A	HET	INTERGENIC
SBS	Chr1	17603730	G-A	HET	INTERGENIC
SBS	Chr1	18737099	G-A	HET	INTRON
SBS	Chr1	20432286	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g36780
SBS	Chr1	27200105	C-T	HOMO	SPLICE_SITE_REGION
SBS	Chr1	27200107	C-T	HOMO	SPLICE_SITE_REGION
SBS	Chr1	28090290	C-T	HET	INTERGENIC
SBS	Chr1	34392738	C-T	HET	INTERGENIC
SBS	Chr2	23264090	T-C	HET	INTERGENIC
SBS	Chr3	2737967	A-G	HET	INTERGENIC
SBS	Chr3	3144879	G-A	HET	INTRON
SBS	Chr3	15080629	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	28572816	A-T	HOMO	UTR_3_PRIME
SBS	Chr3	28572817	C-T	HOMO	UTR_3_PRIME
SBS	Chr4	27380156	G-A	HOMO	INTERGENIC
SBS	Chr5	4932824	T-C	HET	INTERGENIC
SBS	Chr5	4932828	G-A	HET	INTERGENIC
SBS	Chr6	782244	G-A	HET	UTR_3_PRIME
SBS	Chr6	27249377	C-T	HET	INTERGENIC
SBS	Chr7	7036282	C-A	HOMO	INTRON
SBS	Chr7	12459896	C-T	HOMO	INTERGENIC
SBS	Chr8	2418827	G-T	HET	INTERGENIC
SBS	Chr9	6717190	C-T	HET	INTERGENIC
SBS	Chr10	15620005	T-A	HET	INTERGENIC
SBS	Chr11	10879266	G-A	HET	INTERGENIC
SBS	Chr11	13776860	A-G	HET	INTRON
SBS	Chr11	26959816	C-T	HOMO	INTERGENIC
SBS	Chr12	7894609	C-A	HET	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	9215430	9215434	4
Deletion	Chr3	9669192	9669196	4
Deletion	Chr11	10829557	10829565	8
Deletion	Chr4	13454350	13454355	5
Deletion	Chr1	13960054	13960055	1
Deletion	Chr2	16443357	16443402	45
Deletion	Chr10	21685627	21685647	20
Deletion	Chr6	21962018	21962019	1
Deletion	Chr5	23102103	23102110	7	LOC_Os05g39380
Deletion	Chr6	29191001	29296000	105000	18
Deletion	Chr6	29340001	29422000	82000	15
Deletion	Chr1	36206204	36206206	2

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	33113264	33113264	1
Insertion	Chr1	5799185	5799185	1
Insertion	Chr3	14983403	14983404	2
Insertion	Chr3	25480101	25480102	2
Insertion	Chr5	6424661	6424662	2
Insertion	Chr5	21765747	21765750	4
Insertion	Chr8	16396233	16396258	26
Insertion	Chr10	21520601	21520602	2

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	15030937	Chr2	10522458	2

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