Search Results
| Mutant Information |
|---|
| Mutant Name | FN1314-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1314-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 4658930 | C-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 8341373 | A-G | HET | INTERGENIC | |
| SBS | Chr1 | 11671731 | T-A | HET | INTERGENIC | |
| SBS | Chr1 | 13229289 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr1 | 32869017 | C-A | HET | INTERGENIC | |
| SBS | Chr1 | 39536780 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 6360272 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 29103177 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 31942326 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 35266202 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 19206151 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 20334197 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 14838148 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr6 | 18105878 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g31160 |
| SBS | Chr7 | 7359871 | C-T | HOMO | INTRON | |
| SBS | Chr7 | 27413849 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr8 | 20935901 | T-C | HET | INTERGENIC | |
| SBS | Chr8 | 23871749 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr8 | 23871750 | A-T | HET | UTR_3_PRIME | |
| SBS | Chr9 | 1848637 | G-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 14427476 | T-G | HOMO | INTERGENIC | |
| SBS | Chr9 | 16132008 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 10756857 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 11782092 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 21179005 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 12546814 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g22260 |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 1177625 | 1177633 | 8 | |
| Deletion | Chr12 | 3214749 | 3214763 | 14 | |
| Deletion | Chr5 | 4574383 | 4574384 | 1 | |
| Deletion | Chr5 | 4821788 | 4821798 | 10 | |
| Deletion | Chr12 | 6817449 | 6817462 | 13 | LOC_Os12g12380 |
| Deletion | Chr12 | 9289169 | 9289187 | 18 | |
| Deletion | Chr11 | 11934438 | 11934445 | 7 | LOC_Os11g20590 |
| Deletion | Chr12 | 12957656 | 12957666 | 10 | |
| Deletion | Chr5 | 15028481 | 15028492 | 11 | |
| Deletion | Chr2 | 18342456 | 18342458 | 2 | |
| Deletion | Chr12 | 19882842 | 19882846 | 4 | |
| Deletion | Chr9 | 21689475 | 21689491 | 16 | |
| Deletion | Chr12 | 23173221 | 23173225 | 4 | LOC_Os12g37750 |
| Deletion | Chr3 | 25302477 | 25302478 | 1 | |
| Deletion | Chr6 | 26646834 | 26646835 | 1 | |
| Deletion | Chr1 | 28130383 | 28130387 | 4 | |
| Deletion | Chr4 | 29044178 | 29044215 | 37 | |
| Deletion | Chr4 | 29045687 | 29046637 | 950 | LOC_Os04g48710 |
| Deletion | Chr4 | 31212231 | 31212232 | 1 | |
| Deletion | Chr1 | 33095244 | 33095251 | 7 | LOC_Os01g57270 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 15516286 | 15516286 | 1 | |
| Insertion | Chr3 | 17832414 | 17832420 | 7 | LOC_Os03g31300 |
| Insertion | Chr1 | 43059641 | 43059641 | 1 | |
| Insertion | Chr6 | 29524891 | 29524891 | 1 | |
| Insertion | Chr7 | 11631502 | 11631502 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 25293992 | 25732010 | |
| Inversion | Chr12 | 25294008 | 25732016 | |
| Inversion | Chr2 | 30949999 | 31972279 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 29045700 | Chr2 | 30950012 | LOC_Os04g48710 |
| Translocation | Chr4 | 29046627 | Chr2 | 30081845 | 2 |