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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1244098	G-A	HET	INTERGENIC
SBS	Chr1	9565726	G-A	HOMO	INTERGENIC
SBS	Chr1	9681007	T-C	HOMO	INTERGENIC
SBS	Chr1	10606277	T-A	HOMO	INTERGENIC
SBS	Chr1	10606278	G-A	HOMO	INTERGENIC
SBS	Chr1	14082991	G-A	HET	INTERGENIC
SBS	Chr2	15037480	C-T	HOMO	INTERGENIC
SBS	Chr3	20149374	G-T	HET	INTERGENIC
SBS	Chr3	20149375	A-T	HET	INTERGENIC
SBS	Chr3	22079377	A-G	HET	INTERGENIC
SBS	Chr3	25565284	C-T	HET	INTERGENIC
SBS	Chr4	2906274	G-A	HET	INTERGENIC
SBS	Chr4	7775542	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g13920
SBS	Chr4	28857742	G-A	HOMO	INTERGENIC
SBS	Chr5	17393393	G-A	HET	INTERGENIC
SBS	Chr5	18270542	C-G	HOMO	INTERGENIC
SBS	Chr5	29340049	T-A	HOMO	UTR_3_PRIME
SBS	Chr5	29340053	C-A	HOMO	UTR_3_PRIME
SBS	Chr6	2780086	C-T	HET	INTERGENIC
SBS	Chr6	3440989	C-T	HET	INTRON
SBS	Chr7	5029457	C-A	HET	INTERGENIC
SBS	Chr7	7549491	A-T	HET	UTR_3_PRIME
SBS	Chr7	8231841	A-T	HET	INTERGENIC
SBS	Chr8	20259308	T-A	HET	INTERGENIC
SBS	Chr9	1780391	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g03600
SBS	Chr9	19612330	G-A	HET	INTERGENIC
SBS	Chr10	5622857	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g10214
SBS	Chr10	12477612	G-A	HET	INTERGENIC
SBS	Chr11	10483476	C-G	HOMO	INTERGENIC
SBS	Chr12	1025977	G-A	HET	INTERGENIC
SBS	Chr12	2861439	A-C	HET	INTERGENIC
SBS	Chr12	8467357	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g14800
SBS	Chr12	16149129	C-T	HET	INTERGENIC
SBS	Chr12	16350069	C-T	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	2749416	2749417	1
Deletion	Chr3	2792455	2792456	1
Deletion	Chr7	2949001	3279000	330000	52
Deletion	Chr8	3268794	3268799	5
Deletion	Chr3	5573175	5573183	8
Deletion	Chr1	6168164	6168174	10
Deletion	Chr12	7916690	7916691	1
Deletion	Chr3	8636752	8636760	8	LOC_Os03g15660
Deletion	Chr1	9262567	9262569	2
Deletion	Chr2	10601968	10601969	1	LOC_Os02g18280
Deletion	Chr7	11540062	11540073	11
Deletion	Chr12	14843987	14843988	1
Deletion	Chr10	14906113	14906135	22	LOC_Os10g28610
Deletion	Chr8	21904560	21904570	10
Deletion	Chr12	24193628	24193638	10
Deletion	Chr12	25980337	25980344	7	LOC_Os12g41910
Deletion	Chr7	28306647	28306654	7
Deletion	Chr4	28799813	28799823	10
Deletion	Chr1	30488215	30488222	7	LOC_Os01g53060
Deletion	Chr3	30840843	30840844	1
Deletion	Chr1	33409316	33409317	1
Deletion	Chr3	35744399	35744425	26	LOC_Os03g63260

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	22507689	22507690	2
Insertion	Chr2	10135304	10135307	4	LOC_Os02g17620
Insertion	Chr6	5116979	5116979	1
Insertion	Chr10	12295675	12295675	1
Insertion	Chr10	17742013	17742013	1
Insertion	Chr10	18961710	18961711	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	6537808	9360637	2
Inversion	Chr3	6537824	9360688	2
Inversion	Chr11	8109961	8114666
Inversion	Chr11	8114669	8530715	LOC_Os11g15130
Inversion	Chr11	8129799	8800570
Inversion	Chr11	8530707	8800566	LOC_Os11g15130

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6675715	Chr7	2949796	LOC_Os11g12000
Translocation	Chr11	8109969	Chr5	3717886
Translocation	Chr10	15617598	Chr7	3278237
Translocation	Chr10	15617609	Chr7	3279794	LOC_Os07g06720
Translocation	Chr6	19629947	Chr3	24413573
Translocation	Chr6	30128494	Chr5	21791467	2
Translocation	Chr6	30129577	Chr5	21791466	2

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