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Mutant Information

Mutant Name	FN1319-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1319-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11275533	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g19870
SBS	Chr1	13081962	T-A	HET	INTRON
SBS	Chr1	15043653	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g27000
SBS	Chr1	15319021	G-T	HET	INTRON
SBS	Chr1	22788183	C-T	HET	INTERGENIC
SBS	Chr1	31924378	G-A	HET	INTERGENIC
SBS	Chr1	40398194	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g69910
SBS	Chr10	11106087	G-T	HOMO	INTERGENIC
SBS	Chr10	7107949	G-A	HOMO	STOP_GAINED	LOC_Os10g12740
SBS	Chr10	8420119	G-T	HOMO	INTERGENIC
SBS	Chr11	10112687	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g17990
SBS	Chr11	13656580	G-T	HET	INTERGENIC
SBS	Chr11	21295283	C-G	HET	INTERGENIC
SBS	Chr11	7247933	T-A	HET	INTERGENIC
SBS	Chr12	3200681	A-G	HET	INTERGENIC
SBS	Chr12	4231670	G-A	HET	INTRON
SBS	Chr2	26436624	G-A	HOMO	INTERGENIC
SBS	Chr3	32437785	A-T	HOMO	INTERGENIC
SBS	Chr3	32437789	T-C	HOMO	INTERGENIC
SBS	Chr3	34768910	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g61220
SBS	Chr3	35725724	A-T	HET	INTERGENIC
SBS	Chr4	19633397	T-A	HET	INTERGENIC
SBS	Chr4	8251318	C-T	HET	INTERGENIC
SBS	Chr4	9757040	A-T	HET	INTERGENIC
SBS	Chr5	11379172	G-T	HET	INTERGENIC
SBS	Chr5	20553757	A-C	HET	INTERGENIC
SBS	Chr5	20553758	A-T	HET	INTERGENIC
SBS	Chr5	21376227	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g36070
SBS	Chr5	25231421	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g43390
SBS	Chr6	25469519	A-G	HOMO	INTERGENIC
SBS	Chr7	16009024	A-T	HOMO	INTERGENIC
SBS	Chr7	7486370	C-T	HET	INTERGENIC
SBS	Chr8	12786171	G-A	HOMO	INTERGENIC
SBS	Chr8	18184056	C-G	HOMO	INTERGENIC
SBS	Chr8	26633750	A-G	HET	INTERGENIC
SBS	Chr9	1545168	G-T	HET	INTERGENIC
SBS	Chr9	6338280	T-A	HET	SPLICE_SITE_REGION
SBS	Chr9	6338281	C-T	HET	SPLICE_SITE_REGION
SBS	Chr9	6338283	C-A	HET	SPLICE_SITE_DONOR	LOC_Os09g11390
SBS	Chr9	6971537	T-C	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	290001	1002000	712000	131
Deletion	Chr11	903033	903035	2
Deletion	Chr6	1889168	1889173	5
Deletion	Chr11	2691001	2806000	115000	14
Deletion	Chr4	2953421	2953424	3
Deletion	Chr2	3007457	3007459	2	LOC_Os02g06030
Deletion	Chr2	5106911	5113220	6309	LOC_Os02g09880
Deletion	Chr12	10844774	10844779	5
Deletion	Chr9	13662638	13662646	8
Deletion	Chr10	14397712	14397724	12	LOC_Os10g27274
Deletion	Chr9	14855360	14855364	4
Deletion	Chr5	17054920	17054923	3
Deletion	Chr5	18092888	18092892	4
Deletion	Chr2	18737684	18737690	6
Deletion	Chr4	18834001	18886000	52000	9
Deletion	Chr12	19586423	19588759	2336
Deletion	Chr4	20483317	20483318	1
Deletion	Chr11	21215788	21215793	5	LOC_Os11g36090
Deletion	Chr4	21667816	21667817	1
Deletion	Chr11	22369871	22369882	11	LOC_Os11g37780
Deletion	Chr1	23410803	23410805	2	LOC_Os01g41370
Deletion	Chr1	24520259	24520260	1
Deletion	Chr4	25220498	25232153	11655	LOC_Os04g42634
Deletion	Chr12	25531957	25531967	10
Deletion	Chr7	25983398	25983399	1
Deletion	Chr1	31894666	31894680	14
Deletion	Chr4	33257619	33257620	1
Deletion	Chr3	33837386	33837389	3

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	14757650	14757650	1
Insertion	Chr1	19331298	19331299	2
Insertion	Chr4	28539739	28539739	1
Insertion	Chr5	20428418	20428418	1
Insertion	Chr9	15014805	15014808	4
Insertion	Chr9	19866500	19866500	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	21388748	21699414	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	25222941	Chr1	21699418	LOC_Os01g38620
Translocation	Chr4	25229713	Chr1	21388757	LOC_Os01g38180

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