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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	21179355	A-G	HOMO	INTRON
SBS	Chr2	31933692	G-A	HET	INTERGENIC
SBS	Chr3	18509281	G-A	HET	INTERGENIC
SBS	Chr3	26924940	C-A	HET	INTERGENIC
SBS	Chr3	26924942	C-A	HET	INTERGENIC
SBS	Chr4	1518306	C-T	HET	INTERGENIC
SBS	Chr4	24107966	C-T	HET	INTERGENIC
SBS	Chr5	3444515	A-T	HOMO	INTERGENIC
SBS	Chr5	8667222	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g15280
SBS	Chr5	10574209	C-A	HET	INTERGENIC
SBS	Chr5	16803353	T-A	HOMO	INTERGENIC
SBS	Chr5	16803354	C-A	HOMO	INTERGENIC
SBS	Chr6	14270898	C-T	HOMO	INTERGENIC
SBS	Chr6	26269567	C-T	HOMO	INTERGENIC
SBS	Chr7	14755458	C-T	HET	INTRON
SBS	Chr7	28460680	G-T	HET	INTERGENIC
SBS	Chr7	28460681	G-A	HET	INTERGENIC
SBS	Chr9	13381924	G-A	HOMO	INTERGENIC
SBS	Chr10	7955513	T-G	HET	INTRON
SBS	Chr10	20382221	T-G	HET	INTRON
SBS	Chr11	12718925	C-A	HOMO	INTRON
SBS	Chr11	28881740	T-G	HET	INTERGENIC
SBS	Chr12	20145279	G-A	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3335630	3335647	17	LOC_Os02g06630
Deletion	Chr2	3438001	3486000	48000	9
Deletion	Chr11	3652153	3652157	4	LOC_Os11g07250
Deletion	Chr2	4602777	4606084	3307	LOC_Os02g08530
Deletion	Chr2	6902274	6902275	1	LOC_Os02g13020
Deletion	Chr2	7124001	7203000	79000	13
Deletion	Chr9	7516525	7516532	7
Deletion	Chr9	8971335	8971341	6	LOC_Os09g14960
Deletion	Chr6	9998256	9998257	1	LOC_Os06g17260
Deletion	Chr2	10260282	10260285	3
Deletion	Chr3	11382063	11382066	3
Deletion	Chr4	11637435	11637453	18
Deletion	Chr9	12005105	12005110	5
Deletion	Chr6	12452107	12452124	17
Deletion	Chr6	13695157	13695158	1
Deletion	Chr12	14130153	14130170	17
Deletion	Chr6	14880168	14880169	1
Deletion	Chr3	16110380	16110381	1
Deletion	Chr6	16111120	16111125	5
Deletion	Chr7	21243090	21243093	3
Deletion	Chr1	21533477	21533484	7
Deletion	Chr12	21898228	21898236	8
Deletion	Chr9	22251123	22251124	1	LOC_Os09g38710
Deletion	Chr4	24352756	24352757	1	LOC_Os04g41040
Deletion	Chr4	25857146	25857152	6
Deletion	Chr3	26446133	26446146	13	LOC_Os03g46740
Deletion	Chr6	27688731	27688746	15	LOC_Os06g45740
Deletion	Chr2	29381691	29381693	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	8499018	8499019	2
Insertion	Chr2	7140249	7140249	1
Insertion	Chr2	35176583	35176583	1
Insertion	Chr6	26153097	26153099	3
Insertion	Chr8	10678210	10678211	2
Insertion	Chr12	26985006	26985031	26

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	4180251	4834546	2
Inversion	Chr2	6921254	7124454	2
Inversion	Chr2	6922243	7203078
Inversion	Chr6	11683346	12640550

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	18406758	Chr4	34460932	2
Translocation	Chr8	18408587	Chr4	34460933	LOC_Os04g57870
Translocation	Chr9	21602515	Chr2	6922227
Translocation	Chr9	21602526	Chr2	6921255	LOC_Os02g13080
Translocation	Chr11	28874482	Chr2	4602784	2

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