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Mutant Information

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12574082	A-C	HOMO	INTERGENIC
SBS	Chr1	35810214	C-A	HET	INTERGENIC
SBS	Chr1	4612601	G-A	HOMO	INTERGENIC
SBS	Chr11	20522007	T-C	HET	START_GAINED	LOC_Os11g35030
SBS	Chr2	7855847	G-A	HET	INTERGENIC
SBS	Chr3	10246908	T-G	HET	INTERGENIC
SBS	Chr3	26159561	C-T	HET	INTERGENIC
SBS	Chr3	2692327	T-C	HET	INTERGENIC
SBS	Chr4	24114540	C-T	HET	INTERGENIC
SBS	Chr4	31086765	T-A	HET	INTERGENIC
SBS	Chr5	1390029	A-T	HET	INTERGENIC
SBS	Chr5	5612844	A-G	HET	INTERGENIC
SBS	Chr7	11542260	C-T	HOMO	INTERGENIC
SBS	Chr7	16536956	A-T	HOMO	INTERGENIC
SBS	Chr7	23925435	A-T	HET	INTERGENIC
SBS	Chr9	12442284	G-A	HET	INTERGENIC
SBS	Chr9	21964588	T-A	HET	INTRON
SBS	Chr9	9517631	C-T	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	88550	88559	9	LOC_Os02g01170
Deletion	Chr10	299083	299087	4
Deletion	Chr10	713490	713499	9
Deletion	Chr6	4414367	4414372	5
Deletion	Chr1	6834058	6834061	3
Deletion	Chr1	7170986	7170989	3
Deletion	Chr1	7192684	7197918	5234	LOC_Os01g12950
Deletion	Chr4	7789553	7789565	12
Deletion	Chr11	9693842	9693844	2
Deletion	Chr3	10033204	10033205	1
Deletion	Chr3	11744715	11744716	1
Deletion	Chr4	13683001	13729000	46000	9
Deletion	Chr10	14676737	14676747	10
Deletion	Chr7	18343704	18343711	7
Deletion	Chr7	18941528	18942098	570
Deletion	Chr7	22404394	22404401	7	LOC_Os07g37385
Deletion	Chr11	23138763	23138797	34
Deletion	Chr2	24631011	24631022	11	LOC_Os02g40610
Deletion	Chr4	30179331	30179334	3
Deletion	Chr3	30267726	30267729	3	LOC_Os03g52794
Deletion	Chr2	33043678	33043683	5
Deletion	Chr3	33324561	33324562	1
Deletion	Chr2	33419504	33419507	3

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	26715922	26715922	1
Insertion	Chr10	11079885	11079885	1
Insertion	Chr10	314289	314290	2
Insertion	Chr2	9965637	9965638	2
Insertion	Chr7	1905645	1905648	4

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	8501039	8522471

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3240566	Chr5	8684209	LOC_Os05g15330
Translocation	Chr6	16124177	Chr4	13682482
Translocation	Chr6	16124185	Chr4	13682335

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